RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CSRP2Q16527 193 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 NFE2Q16621 373 aaPredicted RBP5.74□□□□□ -1.49
CD44-215ENST00000525241 SPATS1Q496A3 300 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 C1QL3Q5VWW1 255 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 ANKS6Q68DC2 871 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 MIGA2Q7L4E1 593 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 DOK3Q7L591 496 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 GPRIN1Q7Z2K8 1008 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 XYLT1Q86Y38 959 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 RHOT1Q8IXI2 618 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 ANKRD35Q8N283 1001 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 ZGPATQ8N5A5 531 aaKnown RBP5.74□□□□□ -1.49
CD44-215ENST00000525241 SLC35B2Q8TB61 432 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 STON2Q8WXE9 905 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 JPH3Q8WXH2 748 aaPredicted RBP5.74□□□□□ -1.49
CD44-215ENST00000525241 ST8SIA2Q92186 375 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 DVL3Q92997 716 aaPredicted RBP5.74□□□□□ -1.49
CD44-215ENST00000525241 NUP88Q99567 741 aaPredicted RBP5.74□□□□□ -1.49
CD44-215ENST00000525241 MANSC1Q9H8J5 431 aa5.74□□□□□ -1.49
CD44-215ENST00000525241 AJAP1Q9UKB5 411 aaPredicted RBP5.74□□□□□ -1.49
CD44-215ENST00000525241 MFAP3LO75121 409 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 IPO13O94829 963 aaKnown RBP5.73□□□□□ -1.49
CD44-215ENST00000525241 POU2F2P09086 479 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 ZNF20P17024 532 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 VCAM1P19320 739 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 PDCP20941 246 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 FPR1P21462 350 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 PCSK1P29120 753 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 RABGGTBP53611 331 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 TARDBPQ13148 414 aaKnown RBP eCLIP5.73□□□□□ -1.49
CD44-215ENST00000525241 RRP12Q5JTH9 1297 aaKnown RBP5.73□□□□□ -1.49
CD44-215ENST00000525241 FAM83AQ86UY5 434 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 PRR18Q8N4B5 295 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 OR52N2Q8NGI0 321 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 CCHCR1Q8TD31 782 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 CASKIN2Q8WXE0 1202 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 CPPED1Q9BRF8 314 aaPredicted RBP5.73□□□□□ -1.49
CD44-215ENST00000525241 CPEB1Q9BZB8 566 aaKnown RBP5.73□□□□□ -1.49
CD44-215ENST00000525241 SENP6Q9GZR1 1112 aaPredicted RBP5.73□□□□□ -1.49
CD44-215ENST00000525241 KLHL42Q9P2K6 505 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 TESMINQ9Y4I5 508 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 PCDHB1Q9Y5F3 818 aa5.73□□□□□ -1.49
CD44-215ENST00000525241 TBKBP1A7MCY6 615 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 CXorf49A8MYA2 514 aaPredicted RBP5.72□□□□□ -1.49
CD44-215ENST00000525241 B5MCH6 92 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 B8ZZF3 427 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 RFPL1O75677 317 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 IL2RBP14784 551 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 AKAP5P24588 427 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 HIBADHP31937 336 aaKnown RBP5.72□□□□□ -1.49
CD44-215ENST00000525241 CDC42EP1Q00587 391 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 DSC2Q02487 901 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 MTM1Q13496 603 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 LRRC41Q15345 812 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 METTL24Q5JXM2 366 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 AFMIDQ63HM1 303 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 Q6ZRM9 215 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 HTR3DQ70Z44 454 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 PRRT2Q7Z6L0 340 aaPredicted RBP5.72□□□□□ -1.49
CD44-215ENST00000525241 GSPT2Q8IYD1 628 aaKnown RBP5.72□□□□□ -1.49
CD44-215ENST00000525241 MB21D1Q8N884 522 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 KAT5Q92993 513 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 RAB24Q969Q5 203 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 DMRTA2Q96SC8 542 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 TMEM140Q9NV12 185 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.72□□□□□ -1.49
CD44-215ENST00000525241 PNMA8BQ9ULN7 279 aaPredicted RBP5.72□□□□□ -1.49
CD44-215ENST00000525241 ACTL7AQ9Y615 435 aa5.72□□□□□ -1.49
CD44-215ENST00000525241 MYBBP1AQ9BQG0 1328 aaKnown RBP5.72□□□□□ -1.49
CD44-215ENST00000525241 KRTAP23-1A1A580 65 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 KLRG2A4D1S0 409 aaPredicted RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 MUSKO15146 869 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 PLSCR1O15162 318 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 PJA2O43164 708 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 SGTAO43765 313 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 GPR32O75388 356 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 CT47B1P0C2W7 299 aaPredicted RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 HSP90B1P14625 803 aaKnown RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 HK1P19367 917 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 DDCP20711 480 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 ALDH1A3P47895 512 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 FXR1P51114 621 aaKnown RBP eCLIP5.71□□□□□ -1.5
CD44-215ENST00000525241 SCNN1GP51170 649 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 PRKD1Q15139 912 aaPredicted RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 BMT2Q1RMZ1 405 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 DCAF17Q5H9S7 520 aaPredicted RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 USP45Q70EL2 814 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 CATIPQ7Z7H3 387 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 TPH2Q8IWU9 490 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 PALM2Q8IXS6 379 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 ATXN2LQ8WWM7 1075 aaKnown RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 MRGPRX4Q96LA9 322 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 MNTQ99583 582 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 GTPBP4Q9BZE4 634 aaKnown RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 METTL14Q9HCE5 456 aaKnown RBP5.71□□□□□ -1.5
CD44-215ENST00000525241 TDP1Q9NUW8 608 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 MOCS1Q9NZB8 636 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 HDAC5Q9UQL6 1122 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 TSC22D4Q9Y3Q8 395 aa5.71□□□□□ -1.5
CD44-215ENST00000525241 CFAP20Q9Y6A4 193 aaKnown RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms