RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 TNFSF13BQ9Y275 285 aa12.63□□□□□ -0.39
VCAN-212ENST00000515397 C5orf42Q9H799 3197 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 A0A087X0B3 334 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 INPPL1O15357 1258 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 FAM13AO94988 1023 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 CTSAP10619 480 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 MAPTP10636 758 aaKnown RBP12.62□□□□□ -0.39
VCAN-212ENST00000515397 EPCAMP16422 314 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 SMTNP53814 917 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 KCNC3Q14003 757 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 ZNF568Q3ZCX4 644 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 RRAGBQ5VZM2 374 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 SYCE2Q6PIF2 218 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 GLYCTKQ8IVS8 523 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 GJD3Q8N144 294 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 PDILTQ8N807 584 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 LINC00301Q8NCQ3 95 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 SPIRE2Q8WWL2 714 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 NTPCRQ9BSD7 190 aaKnown RBP12.62□□□□□ -0.39
VCAN-212ENST00000515397 MRPL4Q9BYD3 311 aaKnown RBP12.62□□□□□ -0.39
VCAN-212ENST00000515397 GPR62Q9BZJ7 368 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 CCSER1Q9C0I3 900 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 IKZF4Q9H2S9 585 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 EPHX3Q9H6B9 360 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 GOLGA2P5Q9HBQ8 144 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 PTPRHQ9HD43 1115 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 ANKFY1Q9P2R3 1169 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 RBM19Q9Y4C8 960 aaKnown RBP12.62□□□□□ -0.39
VCAN-212ENST00000515397 HCFC2Q9Y5Z7 792 aa12.62□□□□□ -0.39
VCAN-212ENST00000515397 MEFVO15553 781 aaPredicted RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 TADA2AO75478 443 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 THP07101 528 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 SPATA31D3P0C874 917 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 ZSCAN22P10073 491 aaPredicted RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 SP100P23497 879 aaPredicted RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 NMT1P30419 496 aaKnown RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 MATR3P43243 847 aaKnown RBP eCLIP12.61□□□□□ -0.39
VCAN-212ENST00000515397 GRIK3Q13003 919 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 SMAD4Q13485 552 aaKnown RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 PTPN14Q15678 1187 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 DCAF4L1Q3SXM0 396 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 ZC2HC1CQ53FD0 456 aaPredicted RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 ANKRD54Q6NXT1 300 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 SPATA31D4Q6ZUB0 917 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 HAUS6Q7Z4H7 955 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 KRI1Q8N9T8 703 aaKnown RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 LARP4BQ92615 738 aaKnown RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 STAMQ92783 540 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 KLHL5Q96PQ7 755 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 CDCA3Q99618 268 aaPredicted RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 TIPINQ9BVW5 301 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 COLEC11Q9BWP8 271 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 HAPLN2Q9GZV7 340 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 S1PR5Q9H228 398 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 TBC1D7Q9P0N9 293 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 USP15Q9Y4E8 981 aaPredicted RBP12.61□□□□□ -0.39
VCAN-212ENST00000515397 PHLPP2Q6ZVD8 1323 aa12.61□□□□□ -0.39
VCAN-212ENST00000515397 MYMKA6NI61 221 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 ABLIM1O14639 778 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 SPTLC2O15270 562 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 LILRB3O75022 631 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 NR1I2O75469 434 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 F13A1P00488 732 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 SOD2P04179 222 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 CNPP09543 421 aaKnown RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 RPL17P18621 184 aaKnown RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 KLRC2P26717 231 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 NASPP49321 788 aaPredicted RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 SPAG1Q07617 926 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 STRN3Q13033 797 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 COASYQ13057 564 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 BMS1Q14692 1282 aaKnown RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 NAB2Q15742 525 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 SMAD2Q15796 467 aaKnown RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 PUS10Q3MIT2 529 aaKnown RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 TPRNQ4KMQ1 711 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 RARS2Q5T160 578 aaKnown RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 FUT10Q6P4F1 479 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 CEP57Q86XR8 500 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 SMRP1Q8NCR6 262 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 RSPH1Q8WYR4 309 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 BICD1Q96G01 975 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 ZNF396Q96N95 335 aaPredicted RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 ZMAT2Q96NC0 199 aaKnown RBP12.6□□□□□ -0.39
VCAN-212ENST00000515397 C17orf75Q9HAS0 396 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 PARVGQ9HBI0 331 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 CCDC39Q9UFE4 941 aa12.6□□□□□ -0.39
VCAN-212ENST00000515397 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 SMIM28A0A1B0GU29 152 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 TISP43B9A030 160 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 I3L4J1 428 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 K7ENM7 598 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 TULP1O00294 542 aaPredicted RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 SLC26A4O43511 780 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 TRAK2O60296 914 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 KIF4AO95239 1232 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 PROZP22891 400 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 GRM5P41594 1212 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 NCKAP1LP55160 1127 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 ZP2Q05996 745 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms