RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PCDHB18PQ96TA0 734 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 KIFC3Q9BVG8 833 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 PLVAPQ9BX97 442 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 XPNPEP1Q9NQW7 623 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 C1orf112Q9NSG2 853 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 STYXL1Q9Y6J8 313 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 TTI1O43156 1089 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 LDHAP00338 332 aaKnown RBP15.96■□□□□ 0.15
NUP54-217ENST00000514987 PIGRP01833 764 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 LIG4P49917 911 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 POLGP54098 1239 aaPredicted RBP15.96■□□□□ 0.15
NUP54-217ENST00000514987 WDR44Q5JSH3 913 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 SMYD5Q6GMV2 418 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 PPP1R2P3Q6NXS1 205 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 KDM7AQ6ZMT4 941 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 C15orf39Q6ZRI6 1047 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 TRMT1LQ7Z2T5 733 aaKnown RBP15.96■□□□□ 0.15
NUP54-217ENST00000514987 SLC47A2Q86VL8 602 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 CCDC60Q8IWA6 550 aaPredicted RBP15.96■□□□□ 0.15
NUP54-217ENST00000514987 ARFGAP2Q8N6H7 521 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 TAS1R2Q8TE23 839 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 KAT5Q92993 513 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 ATP6V1G3Q96LB4 118 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 PARP2Q9UGN5 583 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 MTUS1Q9ULD2 1270 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 PLAAQ9Y263 795 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 AFG3L2Q9Y4W6 797 aa15.96■□□□□ 0.15
NUP54-217ENST00000514987 SPDYE16A6NNV3 312 aaPredicted RBP15.96■□□□□ 0.14
NUP54-217ENST00000514987 PODXLO00592 558 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 DAPK3O43293 454 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 PHF2O75151 1096 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 MYBL1P10243 752 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 HSD17B3P37058 310 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 RFC5P40937 340 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 NAMPTP43490 491 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 BIRC3Q13489 604 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 EMC2Q15006 297 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 TRADDQ15628 312 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 ZNF653Q96CK0 615 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 FAM213AQ9BRX8 229 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 ERP44Q9BS26 406 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 FAM129AQ9BZQ8 928 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 ZNF302Q9NR11 478 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 PPME1Q9Y570 386 aa15.96■□□□□ 0.14
NUP54-217ENST00000514987 MAFBQ9Y5Q3 323 aaPredicted RBP15.96■□□□□ 0.14
NUP54-217ENST00000514987 MYH9P35579 1960 aaKnown RBP15.96■□□□□ 0.14
NUP54-217ENST00000514987 SRRM3A6NNA2 597 aaPredicted RBP15.95■□□□□ 0.14
NUP54-217ENST00000514987 EIF3HO15372 352 aaKnown RBP eCLIP15.95■□□□□ 0.14
NUP54-217ENST00000514987 OATP04181 439 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 MMEP08473 750 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 MYZAPP0CAP1 466 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 COMTP21964 271 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 CTNNA1P35221 906 aaKnown RBP15.95■□□□□ 0.14
NUP54-217ENST00000514987 PEX5P50542 639 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 EIF3BP55884 814 aaKnown RBP15.95■□□□□ 0.14
NUP54-217ENST00000514987 MESDQ14696 234 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 CLEC16AQ2KHT3 1053 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 MTERF2Q49AM1 385 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 DUPD1Q68J44 220 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 CCDC125Q86Z20 511 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 ZNF564Q8TBZ8 553 aaPredicted RBP15.95■□□□□ 0.14
NUP54-217ENST00000514987 PSPC1Q8WXF1 523 aaKnown RBP15.95■□□□□ 0.14
NUP54-217ENST00000514987 ALG3Q92685 438 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 FNBP1Q96RU3 617 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 NUP85Q9BW27 656 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 NIFKQ9BYG3 293 aaKnown RBP15.95■□□□□ 0.14
NUP54-217ENST00000514987 FAM107BQ9H098 131 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 TSPYL1Q9H0U9 437 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 PORCNQ9H237 461 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 PLEKHA4Q9H4M7 779 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 TMBIM4Q9HC24 238 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 AVENQ9NQS1 362 aaPredicted RBP15.95■□□□□ 0.14
NUP54-217ENST00000514987 PCYOX1Q9UHG3 505 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 TRPC6Q9Y210 931 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 PCDHA3Q9Y5H8 950 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 ADGRA3Q8IWK6 1321 aa15.95■□□□□ 0.14
NUP54-217ENST00000514987 SPOPO43791 374 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 KRT14P02533 472 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 DLATP10515 647 aaKnown RBP15.94■□□□□ 0.14
NUP54-217ENST00000514987 GNGT1P63211 74 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 CEP85LQ5SZL2 805 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 TRIM72Q6ZMU5 477 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 DEPTORQ8TB45 409 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 MAIP1Q8WWC4 291 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 DDX1Q92499 740 aaKnown RBP15.94■□□□□ 0.14
NUP54-217ENST00000514987 CD101Q93033 1021 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 POP1Q99575 1024 aaKnown RBP15.94■□□□□ 0.14
NUP54-217ENST00000514987 DHX33Q9H6R0 707 aaKnown RBP15.94■□□□□ 0.14
NUP54-217ENST00000514987 NRBP2Q9NSY0 501 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 GPRC5DQ9NZD1 345 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 AGO2Q9UKV8 859 aaKnown RBP15.94■□□□□ 0.14
NUP54-217ENST00000514987 PCDHB2Q9Y5E7 798 aa15.94■□□□□ 0.14
NUP54-217ENST00000514987 SIP14410 1827 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 TMEM110-MUSTN1A8MSY1 372 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 KRT5P13647 590 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 RWDD2BP57060 319 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 ZACNQ401N2 412 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 AGBL2Q5U5Z8 902 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 FAM160B1Q5W0V3 765 aa15.93■□□□□ 0.14
NUP54-217ENST00000514987 TAS1R3Q7RTX0 852 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms