RNA–Protein interactions for RNA: ENST00000510801.5

COPS4-208, Transcript of COP9 signalosome subunit 4, human

TSL 5

Gene COPS4, Length 381 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS4-208	ENST00000510801	STYXL1	Q9Y6J8	313 aa		13.65	□□□□□ -0.22
COPS4-208	ENST00000510801		A0A1W2PQ27	194 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801		A0A1W2PQ64	194 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801		A0A1W2PQD8	194 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	PTGES	O14684	152 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	NRP1	O14786	923 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	CLDN3	O15551	220 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	C1R	P00736	705 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	POMC	P01189	267 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	ADRB2	P07550	413 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	CTSA	P10619	480 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	IRS1	P35568	1242 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	ERVFC1	P60507	584 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	ADAM15	Q13444	863 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	TUSC3	Q13454	348 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	KCNC3	Q14003	757 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	DHX8	Q14562	1220 aa	Known RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	BMS1	Q14692	1282 aa	Known RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	LEXM	Q3ZCV2	418 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	ZNF568	Q3ZCX4	644 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	LONRF3	Q496Y0	759 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	TMEM173	Q86WV6	379 aa	Predicted RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	EFHB	Q8N7U6	833 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	MRPL43	Q8N983	215 aa	Known RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	FAM193B	Q96PV7	902 aa	Predicted RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	PPP1R10	Q96QC0	940 aa	Known RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	RPS6KC1	Q96S38	1066 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	C7orf25	Q9BPX7	421 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	ZBP1	Q9H171	429 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	UBE2Z	Q9H832	354 aa	Predicted RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	PLEKHA5	Q9HAU0	1116 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	CNTN3	Q9P232	1028 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	PARP2	Q9UGN5	583 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	HPSE	Q9Y251	543 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	FAN1	Q9Y2M0	1017 aa		13.64	□□□□□ -0.23
COPS4-208	ENST00000510801	MYH15	Q9Y2K3	1946 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801		A0A0B4J269	797 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	TMEM189-UBE2V1	I3L0A0	370 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801		K7ENM7	598 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	FAM189A1	O60320	539 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	MYL1	P05976	194 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	TH	P07101	528 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	KCNE1	P15382	129 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	PBX3	P40426	434 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	EHHADH	Q08426	723 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	SMC1A	Q14683	1233 aa	Known RBP	13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	DUSP6	Q16828	381 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	TMEM132A	Q24JP5	1023 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	PUS10	Q3MIT2	529 aa	Known RBP	13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	TJAP1	Q5JTD0	557 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	MICALL1	Q8N3F8	863 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	PDILT	Q8N807	584 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	PPM1E	Q8WY54	764 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	SPATA32	Q96LK8	384 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	TCF25	Q9BQ70	676 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	CCDC94	Q9BW85	323 aa	Predicted RBP	13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	PRDM6	Q9NQX0	595 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	SLC38A7	Q9NVC3	462 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	MARCH5	Q9NX47	278 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	KCNH3	Q9ULD8	1083 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	USP20	Q9Y2K6	914 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	PCDHB13	Q9Y5F0	798 aa		13.63	□□□□□ -0.23
COPS4-208	ENST00000510801	KIAA1671	Q9BY89	1806 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	HNRNPDL	O14979	420 aa	Known RBP	13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	POLR2D	O15514	142 aa	Known RBP	13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	LILRB3	O75022	631 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SOD2	P04179	222 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	CLTA	P09496	248 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SLFN14	P0C7P3	912 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	LIG1	P18858	919 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	LTBR	P36941	435 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	YARS	P54577	528 aa	Known RBP	13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SKIV2L	Q15477	1246 aa	Known RBP	13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SLFN12L	Q6IEE8	588 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	DYM	Q7RTS9	669 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SFR1	Q86XK3	245 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	CCDC65	Q8IXS2	484 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SNX27	Q96L92	541 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	UROC1	Q96N76	676 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	ACAP3	Q96P50	834 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	COLEC11	Q9BWP8	271 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	VN1R3	Q9BXE9	311 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	PANK2	Q9BZ23	570 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	CHST7	Q9NS84	486 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SSX2IP	Q9Y2D8	614 aa		13.62	□□□□□ -0.23
COPS4-208	ENST00000510801	SMIM28	A0A1B0GU29	152 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	PVALEF	A0A1B0GWK0	134 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	C2orf71	A6NGG8	1288 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	NT5C1B-RDH14	C9J2C7	533 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	OGT	O15294	1046 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	BMP1	P13497	986 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	NMT1	P30419	496 aa	Known RBP	13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	LIG4	P49917	911 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	POSTN	Q15063	836 aa		13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.61	□□□□□ -0.23
COPS4-208	ENST00000510801	L1TD1	Q5T7N2	865 aa	Known RBP	13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms