RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RAB24Q969Q5 203 aa5.16□□□□□ -1.58
HMGB1P28-201ENST00000507778 CDK5RAP3Q96JB5 506 aa5.16□□□□□ -1.58
HMGB1P28-201ENST00000507778 TMX3Q96JJ7 454 aa5.16□□□□□ -1.58
HMGB1P28-201ENST00000507778 MRGPRX4Q96LA9 322 aa5.16□□□□□ -1.58
HMGB1P28-201ENST00000507778 DMRTA2Q96SC8 542 aa5.16□□□□□ -1.58
HMGB1P28-201ENST00000507778 TMEM60Q9H2L4 133 aa5.16□□□□□ -1.58
HMGB1P28-201ENST00000507778 CALCOCO1Q9P1Z2 691 aa5.16□□□□□ -1.58
HMGB1P28-201ENST00000507778 ARID1BQ8NFD5 2236 aaPredicted RBP5.15□□□□□ -1.58
HMGB1P28-201ENST00000507778 UBE2QL1A1L167 161 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 LRRC14BA6NHZ5 514 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 A6NNZ2 444 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM227AF5H4B4 570 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 MATN2O00339 956 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 ARIH2O95376 493 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 CNOT4O95628 575 aaKnown RBP5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 ZBED1O96006 694 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 HRGP04196 525 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 AMY1AP04745 511 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 DDCP20711 480 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 SMARCA1P28370 1054 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 GUCY1A2P33402 732 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 APBA1Q02410 837 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 NOGQ13253 232 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 SP140Q13342 867 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 RIN1Q13671 783 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 SURF1Q15526 300 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 ANO6Q4KMQ2 910 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 PRAMEF14Q5SWL7 426 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 CYB5RLQ6IPT4 315 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 ADGRE4PQ86SQ3 457 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM43AQ8N2R8 423 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 ZGPATQ8N5A5 531 aaKnown RBP5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 SHCBP1Q8NEM2 672 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 FBXO18Q8NFZ0 1043 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 CASKIN2Q8WXE0 1202 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 NEIL1Q96FI4 390 aaPredicted RBP5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 LRFN3Q9BTN0 628 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 SEC61A2Q9H9S3 476 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 MSL2Q9HCI7 577 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 IL23AQ9NPF7 189 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 MOCS1Q9NZB8 636 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 AJAP1Q9UKB5 411 aaPredicted RBP5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 NR2E3Q9Y5X4 410 aa5.15□□□□□ -1.59
HMGB1P28-201ENST00000507778 A0A1W2PRX2 142 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 DBX1A6NMT0 343 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 TPP1O14773 563 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 CDC14BO60729 498 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 TRIM13O60858 407 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 GPR32O75388 356 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 RHCEP18577 417 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 CR2P20023 1033 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 MALP21145 153 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 GZMKP49863 264 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 AGFG1P52594 562 aaKnown RBP5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 ATP8B2P98198 1209 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 RHDQ02161 417 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 HDAC1Q13547 482 aaPredicted RBP5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 SAFB2Q14151 953 aaKnown RBP eCLIP5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 GALEQ14376 348 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 SAFBQ15424 915 aaKnown RBP eCLIP5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 COBLL1Q53SF7 1204 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM47AQ5JRC9 791 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 NPNTQ6UXI9 565 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 CCDC149Q6ZUS6 474 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 ZNF572Q7Z3I7 529 aaPredicted RBP5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 HEATR3Q7Z4Q2 680 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 KIAA0319LQ8IZA0 1049 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 SYT8Q8NBV8 401 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM156AQ8NDB6 213 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 PJA1Q8NG27 643 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 IFI44Q8TCB0 444 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 ARL8AQ96BM9 186 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 IL17RAQ96F46 866 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM167AQ96KS9 214 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 SAMD11Q96NU1 681 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 LMF1Q96S06 567 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 VRK1Q99986 396 aaPredicted RBP5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 DPYSL5Q9BPU6 564 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 TCF25Q9BQ70 676 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 B3GNT5Q9BYG0 378 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 ENKD1Q9H0I2 346 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 EPC1Q9H2F5 836 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 DDX21Q9NR30 783 aaKnown RBP eCLIP5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 LMBRD1Q9NUN5 540 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 OAZ3Q9UMX2 235 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 L1RE1Q9UN81 338 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 PCDHA3Q9Y5H8 950 aa5.14□□□□□ -1.59
HMGB1P28-201ENST00000507778 A0A088AWK7 358 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 CAPN8A6NHC0 703 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 H3BUI4 141 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 TEX33O43247 280 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 NBPF7P0C2Y1 421 aaPredicted RBP5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 PHKG2P15735 406 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 PCSK1P29120 753 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 EPHB4P54760 987 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 ZNF280AP59817 542 aaPredicted RBP5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 CTXN1P60606 82 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM193AP78312 1265 aa5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 NKX6-1P78426 367 aaPredicted RBP5.13□□□□□ -1.59
HMGB1P28-201ENST00000507778 GPSM2P81274 684 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms