RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CEP95Q96GE4 821 aa5.81□□□□□ -1.48
VPS50-219ENST00000495039 MTFR1LQ9H019 292 aa5.81□□□□□ -1.48
VPS50-219ENST00000495039 OSBPL2Q9H1P3 480 aa5.81□□□□□ -1.48
VPS50-219ENST00000495039 PPP2R3BQ9Y5P8 575 aa5.81□□□□□ -1.48
VPS50-219ENST00000495039 TMEM127O75204 238 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 FLT3LGP49771 235 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 NEK4P51957 841 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 CHN2P52757 468 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 SIM1P81133 766 aaPredicted RBP5.8□□□□□ -1.48
VPS50-219ENST00000495039 OCRLQ01968 901 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 SCAPQ12770 1279 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 FOXF2Q12947 444 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 NFE2L2Q16236 605 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 ABHD15Q6UXT9 468 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 MICALCLQ6ZW33 695 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 MAPKAPK5Q8IW41 473 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 RHOT2Q8IXI1 618 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 SRRM1Q8IYB3 904 aaKnown RBP5.8□□□□□ -1.48
VPS50-219ENST00000495039 OR56A1Q8NGH5 318 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 Q96MF0 132 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 SEMA4GQ9NTN9 838 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 TMPRSS11EQ9UL52 423 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 NOX1Q9Y5S8 564 aa5.8□□□□□ -1.48
VPS50-219ENST00000495039 SALL3Q9BXA9 1300 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 DRGXA6NNA5 263 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 PJA2O43164 708 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 RBMXL2O75526 392 aaKnown RBP5.79□□□□□ -1.48
VPS50-219ENST00000495039 ATXN7L2Q5T6C5 722 aaPredicted RBP5.79□□□□□ -1.48
VPS50-219ENST00000495039 Q6ZNX1 250 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 GPR149Q86SP6 731 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 ARHGEF25Q86VW2 580 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 ZNF384Q8TF68 577 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 ZNF480Q8WV37 535 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 SMG7Q92540 1137 aaKnown RBP5.79□□□□□ -1.48
VPS50-219ENST00000495039 PAWRQ96IZ0 340 aaKnown RBP5.79□□□□□ -1.48
VPS50-219ENST00000495039 PHACTR3Q96KR7 559 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 ALOXE3Q9BYJ1 711 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 KCNG1Q9UIX4 513 aa5.79□□□□□ -1.48
VPS50-219ENST00000495039 CDK11AQ9UQ88 783 aaPredicted RBP5.79□□□□□ -1.48
VPS50-219ENST00000495039 LCHNA4D1U4 455 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 MATN4O95460 622 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 ASMTLO95671 621 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 POU3F2P20265 443 aaPredicted RBP5.78□□□□□ -1.48
VPS50-219ENST00000495039 CRHR1P34998 444 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 RARRES1P49788 294 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 MANFP55145 182 aaKnown RBP5.78□□□□□ -1.48
VPS50-219ENST00000495039 CLRN1P58418 232 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 KRTAP10-9P60411 292 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 TERF2Q15554 542 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 MFSD14BQ5SR56 506 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 PRAMEF14Q5SWL7 426 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 FRMD7Q6ZUT3 714 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 LYSMD2Q8IV50 215 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 SLC41A1Q8IVJ1 513 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 TMEM132CQ8N3T6 1108 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 ANO3Q9BYT9 981 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 KLHL11Q9NVR0 708 aa5.78□□□□□ -1.48
VPS50-219ENST00000495039 CTSSP25774 331 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 CACNA2D1P54289 1103 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 TRIM25Q14258 630 aaKnown RBP5.77□□□□□ -1.49
VPS50-219ENST00000495039 SART3Q15020 963 aaKnown RBP5.77□□□□□ -1.49
VPS50-219ENST00000495039 SYNPOQ8N3V7 929 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 SMC1BQ8NDV3 1235 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 SH3TC2Q8TF17 1288 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 FUBP1Q96AE4 644 aaKnown RBP5.77□□□□□ -1.49
VPS50-219ENST00000495039 REXO4Q9GZR2 422 aaKnown RBP5.77□□□□□ -1.49
VPS50-219ENST00000495039 MS4A5Q9H3V2 200 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 TBCCD1Q9NVR7 557 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 TMEM260Q9NX78 707 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 LRIT1Q9P2V4 623 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 RNF7Q9UBF6 113 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 CDY2AQ9Y6F7 541 aa5.77□□□□□ -1.49
VPS50-219ENST00000495039 PROB1E7EW31 1015 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 KDM1AO60341 852 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 ELANEP08246 267 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 SNRPA1P09661 255 aaKnown RBP5.76□□□□□ -1.49
VPS50-219ENST00000495039 SF3A1Q15459 793 aaKnown RBP5.76□□□□□ -1.49
VPS50-219ENST00000495039 FAM47AQ5JRC9 791 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 TSHZ3Q63HK5 1081 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 B3GNTL1Q67FW5 361 aaPredicted RBP5.76□□□□□ -1.49
VPS50-219ENST00000495039 SLC35B2Q8TB61 432 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 ANKS1AQ92625 1134 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 GPR101Q96P66 508 aaPredicted RBP5.76□□□□□ -1.49
VPS50-219ENST00000495039 CASS4Q9NQ75 786 aa5.76□□□□□ -1.49
VPS50-219ENST00000495039 DNAJC9-AS1A6NH13 148 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 CXorf49A8MYA2 514 aaPredicted RBP5.75□□□□□ -1.49
VPS50-219ENST00000495039 MGST3O14880 152 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 RAB11FIP3O75154 756 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 PROP1O75360 226 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 C1QL1O75973 258 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 MRPS35P82673 323 aaKnown RBP5.75□□□□□ -1.49
VPS50-219ENST00000495039 BMS1Q14692 1282 aaKnown RBP5.75□□□□□ -1.49
VPS50-219ENST00000495039 SCARB1Q8WTV0 552 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 RNF31Q96EP0 1072 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 FUBP3Q96I24 572 aaKnown RBP eCLIP5.75□□□□□ -1.49
VPS50-219ENST00000495039 RNPEPQ9H4A4 650 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.75□□□□□ -1.49
VPS50-219ENST00000495039 GALNT9Q9HCQ5 603 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 SPTLC3Q9NUV7 552 aa5.75□□□□□ -1.49
VPS50-219ENST00000495039 FOXJ2Q9P0K8 574 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms