RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 LMBRD2Q68DH5 695 aaPredicted RBP12.04□□□□□ -0.48
CHMP3-209ENST00000494623 DUPD1Q68J44 220 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 CYFIP1Q7L576 1253 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 CCDC60Q8IWA6 550 aaPredicted RBP12.04□□□□□ -0.48
CHMP3-209ENST00000494623 GPD1LQ8N335 351 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 REPS2Q8NFH8 660 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 TMC2Q8TDI7 906 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 ATP8B4Q8TF62 1192 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 HVCN1Q96D96 273 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 RPS6KC1Q96S38 1066 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 FMO2Q99518 471 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 SLC9A2Q9UBY0 812 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 RGS17Q9UGC6 210 aaPredicted RBP12.04□□□□□ -0.48
CHMP3-209ENST00000494623 A6NNZ2 444 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 MYO1FO00160 1098 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 DGAT1O75907 488 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 RPS12P25398 132 aaKnown RBP12.04□□□□□ -0.48
CHMP3-209ENST00000494623 ACTR2P61160 394 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 PRKCEQ02156 737 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 MTMR3Q13615 1198 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 TCEAL1Q15170 157 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 TUBB8Q3ZCM7 444 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 PHLDB2Q86SQ0 1253 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 JAMLQ86YT9 394 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 ZDHHC14Q8IZN3 488 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 PRELID2Q8N945 189 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 IFT74Q96LB3 600 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 POLR3FQ9H1D9 316 aaPredicted RBP12.04□□□□□ -0.48
CHMP3-209ENST00000494623 XPNPEP1Q9NQW7 623 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 CYP26B1Q9NR63 512 aa12.04□□□□□ -0.48
CHMP3-209ENST00000494623 ZNF214Q9UL59 606 aaPredicted RBP12.04□□□□□ -0.48
CHMP3-209ENST00000494623 SYNGAP1Q96PV0 1343 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 NDUFAB1O14561 156 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 DKC1O60832 514 aaKnown RBP eCLIP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 BAG6P46379 1132 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 PRKG1Q13976 671 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 CLUL1Q15846 466 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 SEL1L2Q5TEA6 688 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 USP37Q86T82 979 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 MCPH1Q8NEM0 835 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 SLC16A10Q8TF71 515 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 FBXL18Q96ME1 805 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 WNT8AQ9H1J5 351 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 C17orf75Q9HAS0 396 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 TCRBV7S2A1N4TA0A589 114 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 FAM187AA6NFU0 413 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 ERLIN2O94905 339 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 LSP1P33241 339 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 MDH1P40925 334 aaKnown RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 DHX34Q14147 1143 aaKnown RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 BRDTQ58F21 947 aaPredicted RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 ANGEL2Q5VTE6 544 aaKnown RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 ACAD10Q6JQN1 1059 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 RUFY4Q6ZNE9 571 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 C1orf131Q8NDD1 294 aaKnown RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 ZNF516Q92618 1163 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 TMEM143Q96AN5 459 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 ATP6V0A4Q9HBG4 840 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 A1CFQ9NQ94 594 aaKnown RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 PDLIM7Q9NR12 457 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 CYP39A1Q9NYL5 469 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 CNOT8Q9UFF9 292 aaKnown RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 NOVA2Q9UNW9 492 aaKnown RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 RGPD3A6NKT7 1758 aaPredicted RBP12.03□□□□□ -0.48
CHMP3-209ENST00000494623 RGPD4Q7Z3J3 1758 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 FER1L6Q2WGJ9 1857 aa12.03□□□□□ -0.48
CHMP3-209ENST00000494623 PHF2O75151 1096 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 CYP1A2P05177 515 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 LIG4P49917 911 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 SEC24CP53992 1094 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 SP2Q02086 613 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 IFFO1Q0D2I5 559 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 TTC27Q6P3X3 843 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 ABHD15Q6UXT9 468 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 TAS1R3Q7RTX0 852 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 DDX1Q92499 740 aaKnown RBP12.02□□□□□ -0.48
CHMP3-209ENST00000494623 RASSF4Q9H2L5 321 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 LRRC4CQ9HCJ2 640 aa12.02□□□□□ -0.48
CHMP3-209ENST00000494623 KIAA0391O15091 583 aaKnown RBP12.02□□□□□ -0.49
CHMP3-209ENST00000494623 GRIN3BO60391 1043 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 MTA2O94776 668 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 TNNI1P19237 187 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 CHRNA3P32297 505 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 GTF2H1P32780 548 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 PTGIRP43119 386 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 ACOT2P49753 483 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 MCCD1P59942 119 aaPredicted RBP12.02□□□□□ -0.49
CHMP3-209ENST00000494623 EMC10Q5UCC4 262 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 MIS18BP1Q6P0N0 1132 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 CCDC137Q6PK04 289 aaKnown RBP12.02□□□□□ -0.49
CHMP3-209ENST00000494623 CD101Q93033 1021 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 ACAD9Q9H845 621 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 ZDHHC18Q9NUE0 388 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 RASAL2Q9UJF2 1139 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 GTF3C4Q9UKN8 822 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 PTPN22Q9Y2R2 807 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 GARTP22102 1010 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 CTNNA2P26232 953 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 KCNJ1P48048 391 aa12.02□□□□□ -0.49
CHMP3-209ENST00000494623 POLGP54098 1239 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms