RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PAAF1Q9BRP4 392 aa15.06■□□□□ 0
COL6A3-211ENST00000491233 ADPGKQ9BRR6 497 aa15.06■□□□□ 0
COL6A3-211ENST00000491233 BHMT2Q9H2M3 363 aa15.06■□□□□ 0
COL6A3-211ENST00000491233 CHST7Q9NS84 486 aa15.06■□□□□ 0
COL6A3-211ENST00000491233 DDX19AQ9NUU7 478 aaKnown RBP15.06■□□□□ 0
COL6A3-211ENST00000491233 SNTG2Q9NY99 539 aa15.06■□□□□ 0
COL6A3-211ENST00000491233 LRWD1Q9UFC0 647 aa15.06■□□□□ 0
COL6A3-211ENST00000491233 PCDHB6Q9Y5E3 794 aa15.06■□□□□ 0
COL6A3-211ENST00000491233 MYH11P35749 1972 aa15.05■□□□□ 0
COL6A3-211ENST00000491233 DOCK8Q8NF50 2099 aa15.05■□□□□ 0
COL6A3-211ENST00000491233 ACKR2O00590 384 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 PTGESO14684 152 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 RFPL2O75678 378 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 U2AF2P26368 475 aaKnown RBP eCLIP15.05■□□□□ -0
COL6A3-211ENST00000491233 AVPR2P30518 371 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 TOB1P50616 345 aaPredicted RBP15.05■□□□□ -0
COL6A3-211ENST00000491233 PTPN5P54829 565 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 USP41Q3LFD5 358 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 OTOP3Q7RTS5 596 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 GLYCTKQ8IVS8 523 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 HASPINQ8TF76 798 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 RIN2Q8WYP3 895 aaPredicted RBP15.05■□□□□ -0
COL6A3-211ENST00000491233 IFT74Q96LB3 600 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 PRRX2Q99811 253 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 CXCL16Q9H2A7 254 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 POLD4Q9HCU8 107 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.05■□□□□ -0
COL6A3-211ENST00000491233 DPP7Q9UHL4 492 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 KIAA1024Q9UPX6 916 aa15.05■□□□□ -0
COL6A3-211ENST00000491233 SF3B1O75533 1304 aaKnown RBP eCLIP15.05■□□□□ -0
COL6A3-211ENST00000491233 CLUHO75153 1309 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 CCDC195A0A1B0GUA6 201 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 PP2D1A8MPX8 630 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 TADA2AO75478 443 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 KIF4AO95239 1232 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 CENPBP07199 599 aaPredicted RBP15.04■□□□□ -0
COL6A3-211ENST00000491233 SPATA31D3P0C874 917 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 RPL17P18621 184 aaKnown RBP15.04■□□□□ -0
COL6A3-211ENST00000491233 TCF15Q12870 199 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 PTGDRQ13258 359 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 DCAF4L1Q3SXM0 396 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 PRSS55Q6UWB4 352 aaPredicted RBP15.04■□□□□ -0
COL6A3-211ENST00000491233 SPATA31D4Q6ZUB0 917 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 PALB2Q86YC2 1186 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 IGSF22Q8N9C0 903 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 KIFAP3Q92845 792 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 RAB34Q9BZG1 259 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 GDAQ9Y2T3 454 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 CITO14578 2027 aa15.04■□□□□ -0
COL6A3-211ENST00000491233 PHLPP2Q6ZVD8 1323 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 TGM5O43548 720 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 THP07101 528 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 CREMQ03060 361 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 RTP2Q5QGT7 225 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 GPR65Q8IYL9 337 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 SMG7Q92540 1137 aaKnown RBP15.03■□□□□ -0
COL6A3-211ENST00000491233 PHOX2BQ99453 314 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 FNIP2Q9P278 1114 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 STK24Q9Y6E0 443 aa15.03■□□□□ -0
COL6A3-211ENST00000491233 PDCD11Q14690 1871 aaKnown RBP15.03■□□□□ -0
COL6A3-211ENST00000491233 E9PMD0 336 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 GBP2P32456 591 aaPredicted RBP15.02■□□□□ -0
COL6A3-211ENST00000491233 EFNA5P52803 228 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 PDIA5Q14554 519 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 RABEP1Q15276 862 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 NAB2Q15742 525 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 GLRA4Q5JXX5 417 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 NT5DC1Q5TFE4 455 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 ATF7IP2Q5U623 682 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 FAM171A1Q5VUB5 890 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 CYP26C1Q6V0L0 522 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 HDAC7Q8WUI4 952 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 ZNF707Q96C28 371 aaPredicted RBP15.02■□□□□ -0
COL6A3-211ENST00000491233 RHOBTB2Q9BYZ6 727 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 PLEKHA4Q9H4M7 779 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 WDR6Q9NNW5 1121 aaKnown RBP15.02■□□□□ -0
COL6A3-211ENST00000491233 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.02■□□□□ -0
COL6A3-211ENST00000491233 KIF3AQ9Y496 699 aa15.02■□□□□ -0
COL6A3-211ENST00000491233 PIEZO1Q92508 2521 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 DOCK6Q96HP0 2047 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 LAD1O00515 517 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 N4BP1O75113 896 aaKnown RBP15.01□□□□□ -0.01
COL6A3-211ENST00000491233 C1RP00736 705 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 PRPHP41219 470 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 PEX3P56589 373 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 TDGQ13569 410 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 PSMD5Q16401 504 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 IL17AQ16552 155 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 KRT79Q5XKE5 535 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 MCTP1Q6DN14 999 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 LILRA6Q6PI73 481 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 CEP57Q86XR8 500 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 DAW1Q8N136 415 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 TMEM105Q8N8V8 129 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 PIK3R5Q8WYR1 880 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 STAMQ92783 540 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 TTPALQ9BTX7 342 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 RUSC1Q9BVN2 902 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 MFSD1Q9H3U5 465 aa15.01□□□□□ -0.01
COL6A3-211ENST00000491233 PIDD1Q9HB75 910 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms