RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CDR2LQ86X02 465 aaPredicted RBP23.5■■□□□ 1.35
SMC4-221ENST00000489573 BRSK2Q8IWQ3 736 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 OR8K1Q8NGG5 319 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 FNBP1Q96RU3 617 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 BAG1Q99933 345 aaPredicted RBP23.5■■□□□ 1.35
SMC4-221ENST00000489573 PAK6Q9NQU5 681 aaPredicted RBP23.5■■□□□ 1.35
SMC4-221ENST00000489573 CEP72Q9P209 647 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 PYCARDQ9ULZ3 195 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 KBTBD13C9JR72 458 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 TULP1O00294 542 aaPredicted RBP23.49■■□□□ 1.35
SMC4-221ENST00000489573 NOL4O94818 638 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 DLATP10515 647 aaKnown RBP23.49■■□□□ 1.35
SMC4-221ENST00000489573 NCBP1Q09161 790 aaKnown RBP23.49■■□□□ 1.35
SMC4-221ENST00000489573 PTGISQ16647 500 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 SEZ6Q53EL9 994 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 RPAINQ86UA6 219 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 TMEM139Q8IV31 216 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 DNAJC7Q99615 494 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 CELF4Q9BZC1 486 aaKnown RBP23.49■■□□□ 1.35
SMC4-221ENST00000489573 TMEM117Q9H0C3 514 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 GANQ9H2C0 597 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 TMEM8AQ9HCN3 771 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 PRDM10Q9NQV6 1147 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 CPSF3Q9UKF6 684 aaKnown RBP23.49■■□□□ 1.35
SMC4-221ENST00000489573 PHF24Q9UPV7 400 aa23.49■■□□□ 1.35
SMC4-221ENST00000489573 A0A1B0GUA9 196 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 A0A1W2PQ45 241 aaPredicted RBP23.48■■□□□ 1.35
SMC4-221ENST00000489573 A0A1W2PQY0 241 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 TNFSF9P41273 254 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 CLDN10P78369 228 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 KRT39Q6A163 491 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 DPY19L2P1Q6NXN4 242 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 CACNA2D4Q7Z3S7 1137 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 THNSL1Q8IYQ7 743 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 POP1Q99575 1024 aaKnown RBP23.48■■□□□ 1.35
SMC4-221ENST00000489573 ADPGKQ9BRR6 497 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 NAA15Q9BXJ9 866 aaKnown RBP23.48■■□□□ 1.35
SMC4-221ENST00000489573 INTS2Q9H0H0 1204 aaKnown RBP23.48■■□□□ 1.35
SMC4-221ENST00000489573 TOPORSQ9NS56 1045 aaPredicted RBP23.48■■□□□ 1.35
SMC4-221ENST00000489573 TRPV2Q9Y5S1 764 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 ACTN1P12814 892 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 FECHP22830 423 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 APBA1Q02410 837 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 MTFR1Q15390 333 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 TSR1Q2NL82 804 aaKnown RBP23.48■■□□□ 1.35
SMC4-221ENST00000489573 KLHDC7AQ5VTJ3 777 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 TRIM65Q6PJ69 517 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 TMEM40Q8WWA1 233 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 WNT8BQ93098 351 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 PDE11AQ9HCR9 933 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 SIX2Q9NPC8 291 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 STARD7Q9NQZ5 370 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 CDY2AQ9Y6F7 541 aa23.48■■□□□ 1.35
SMC4-221ENST00000489573 CCL5P13501 91 aa23.47■■□□□ 1.35
SMC4-221ENST00000489573 WNT7BP56706 349 aa23.47■■□□□ 1.35
SMC4-221ENST00000489573 POLR2FP61218 127 aaKnown RBP23.47■■□□□ 1.35
SMC4-221ENST00000489573 KYAT1Q16773 422 aa23.47■■□□□ 1.35
SMC4-221ENST00000489573 EPC2Q52LR7 807 aa23.47■■□□□ 1.35
SMC4-221ENST00000489573 APBB1IPQ7Z5R6 666 aaPredicted RBP23.47■■□□□ 1.35
SMC4-221ENST00000489573 BAP1Q92560 729 aa23.47■■□□□ 1.35
SMC4-221ENST00000489573 CGRRF1Q99675 332 aa23.47■■□□□ 1.35
SMC4-221ENST00000489573 FBXL5Q9UKA1 691 aa23.47■■□□□ 1.35
SMC4-221ENST00000489573 A0A0U1RQG5 324 aaPredicted RBP23.46■■□□□ 1.35
SMC4-221ENST00000489573 DNM1LO00429 736 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 MYCP01106 439 aaPredicted RBP23.46■■□□□ 1.35
SMC4-221ENST00000489573 AXLP30530 894 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 PTK7Q13308 1070 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 SURF1Q15526 300 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 DCAF4L1Q3SXM0 396 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 NOTUMQ6P988 496 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 CTU1Q7Z7A3 348 aaKnown RBP23.46■■□□□ 1.35
SMC4-221ENST00000489573 CEP120Q8N960 986 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 EHBP1Q8NDI1 1231 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 DEFB118Q96PH6 123 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 RNF208Q9H0X6 261 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 NOD1Q9Y239 953 aa23.46■■□□□ 1.35
SMC4-221ENST00000489573 ARHGAP6O43182 974 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 UCHL3P15374 230 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 TNNI1P19237 187 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 HOXA11P31270 313 aaPredicted RBP23.45■■□□□ 1.34
SMC4-221ENST00000489573 PDXDC1Q6P996 788 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 RRAGAQ7L523 313 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 SLC43A3Q8NBI5 491 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 LMO3Q8TAP4 145 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 KIAA1524Q8TCG1 905 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 NLRC4Q9NPP4 1024 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 TRMT13Q9NUP7 481 aaKnown RBP23.45■■□□□ 1.34
SMC4-221ENST00000489573 COQ4Q9Y3A0 265 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 DAAM1Q9Y4D1 1078 aa23.45■■□□□ 1.34
SMC4-221ENST00000489573 CLTAP09496 248 aa23.44■■□□□ 1.34
SMC4-221ENST00000489573 OSTNP61366 133 aa23.44■■□□□ 1.34
SMC4-221ENST00000489573 POU5F1Q01860 360 aaKnown RBP23.44■■□□□ 1.34
SMC4-221ENST00000489573 SLC27A1Q6PCB7 646 aa23.44■■□□□ 1.34
SMC4-221ENST00000489573 C15orf39Q6ZRI6 1047 aa23.44■■□□□ 1.34
SMC4-221ENST00000489573 SV2AQ7L0J3 742 aa23.44■■□□□ 1.34
SMC4-221ENST00000489573 SENP6Q9GZR1 1112 aaPredicted RBP23.44■■□□□ 1.34
SMC4-221ENST00000489573 NUCKS1Q9H1E3 243 aaKnown RBP23.44■■□□□ 1.34
SMC4-221ENST00000489573 RPF1Q9H9Y2 349 aaKnown RBP23.44■■□□□ 1.34
SMC4-221ENST00000489573 ZNHIT6Q9NWK9 470 aaKnown RBP23.44■■□□□ 1.34
SMC4-221ENST00000489573 FHOD1Q9Y613 1164 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms