RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SETD4Q9NVD3 440 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 CCDC66A2RUB6 948 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 LRRIQ4A6NIV6 560 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 MAP2K7O14733 419 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 PIGRP01833 764 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 MYL3P08590 195 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 ABCD1P33897 745 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 VAV2P52735 878 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 BRD3Q15059 726 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 FSCN1Q16658 493 aaKnown RBP13.17□□□□□ -0.3
HDAC6-230ENST00000488543 KIAA0753Q2KHM9 967 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 SLC9C1Q4G0N8 1177 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 EPC2Q52LR7 807 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 DEPTORQ8TB45 409 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 JAKMIP2Q96AA8 810 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 MFSD14AQ96MC6 490 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 ADAM21Q9UKJ8 722 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 FAN1Q9Y2M0 1017 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 STYXL1Q9Y6J8 313 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 EVPLQ92817 2033 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 MACROD2A1Z1Q3 448 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 LRRIQ3A6PVS8 624 aaPredicted RBP13.16□□□□□ -0.3
HDAC6-230ENST00000488543 HNRNPDLO14979 420 aaKnown RBP13.16□□□□□ -0.3
HDAC6-230ENST00000488543 FKTNO75072 461 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 C22orf31O95567 290 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 SCP2P22307 547 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 HIC1Q14526 733 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 GNASQ5JWF2 1037 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 MARCH8Q5T0T0 291 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 KIAA1328Q86T90 577 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 RHPN2Q8IUC4 686 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 MSANTD4Q8NCY6 345 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 RAET1EQ8TD07 263 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 POMGNT1Q8WZA1 660 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 HAPLN2Q9GZV7 340 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 PCDHA13Q9Y5I0 950 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 PMM2O15305 246 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 P4HA2O15460 535 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 AKR1B10O60218 316 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 DUSP11O75319 330 aaKnown RBP13.16□□□□□ -0.3
HDAC6-230ENST00000488543 CSDE1O75534 798 aaKnown RBP13.16□□□□□ -0.3
HDAC6-230ENST00000488543 GCLMP48507 274 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 LAMTOR4Q0VGL1 99 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 IRF5Q13568 498 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 IER5Q5VY09 327 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 EHBP1Q8NDI1 1231 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 GPR88Q9GZN0 384 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 TMEM134Q9H6X4 195 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 SUCLA2Q9P2R7 463 aaPredicted RBP13.16□□□□□ -0.3
HDAC6-230ENST00000488543 MYO1AQ9UBC5 1043 aa13.16□□□□□ -0.3
HDAC6-230ENST00000488543 TTLL13PA6NNM8 815 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 SEPT4O43236 478 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 LRRN2O75325 713 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 HOXD10P28358 340 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 ARID5AQ03989 594 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 GFPT1Q06210 699 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-230ENST00000488543 CYP24A1Q07973 514 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 PPFIA1Q13136 1202 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 SPA17Q15506 151 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 GRIK4Q16099 956 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 TDRD12Q587J7 1177 aaKnown RBP13.15□□□□□ -0.3
HDAC6-230ENST00000488543 GPD1LQ8N335 351 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 TMC2Q8TDI7 906 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 PARD3BQ8TEW8 1205 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 BICD1Q96G01 975 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 SPAG5Q96R06 1193 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 TMEM117Q9H0C3 514 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 DEF6Q9H4E7 631 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 RAB21Q9UL25 225 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 L1RE1Q9UN81 338 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 ATP8B1O43520 1251 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 IPO7O95373 1038 aaKnown RBP13.15□□□□□ -0.3
HDAC6-230ENST00000488543 F2P00734 622 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 PRKCIP41743 596 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 LIG4P49917 911 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 CPT1AP50416 773 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 ZNF200P98182 395 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-230ENST00000488543 KLHL30Q0D2K2 578 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 STRN3Q13033 797 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 CASP8Q14790 479 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 ZNF484Q5JVG2 852 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 CDCA2Q69YH5 1023 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-230ENST00000488543 RNF149Q8NC42 400 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 OLIG1Q8TAK6 271 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 PSMB7Q99436 277 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 CCDC113Q9H0I3 377 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 SMARCAL1Q9NZC9 954 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 APEX2Q9UBZ4 518 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 DNAJC12Q9UKB3 198 aa13.15□□□□□ -0.3
HDAC6-230ENST00000488543 K7ERI5 159 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 PDE2AO00408 941 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 GAS2O43903 313 aaKnown RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 VTNP04004 478 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 ENPEPQ07075 957 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 PHLDB3Q6NSJ2 640 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 MTHFD1LQ6UB35 978 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 CXCL17Q6UXB2 119 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 ZNF571Q7Z3V5 609 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 LMBR1Q8WVP7 490 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 PSPC1Q8WXF1 523 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms