RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SLC17A6Q9P2U8 582 aa5.03□□□□□ -1.6
SMC4-220ENST00000488017 LRRC3CA6NJW4 275 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 DRGXA6NNA5 263 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 ZFPL1O95159 310 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 POU3F3P20264 500 aaPredicted RBP5.02□□□□□ -1.61
SMC4-220ENST00000488017 ZNF81P51508 661 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 RBL2Q08999 1139 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 CFAP100Q494V2 611 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 NAALADL2Q58DX5 795 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 GPR158Q5T848 1215 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 KIF18BQ86Y91 864 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 MAPKAPK5Q8IW41 473 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 TMEM132CQ8N3T6 1108 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 ZNF496Q96IT1 587 aaPredicted RBP5.02□□□□□ -1.61
SMC4-220ENST00000488017 KRTAP2-2Q9BYT5 123 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 MTFR1LQ9H019 292 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 WNT8AQ9H1J5 351 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 TMEM74BQ9NUR3 256 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 IFT57Q9NWB7 429 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 LRIT1Q9P2V4 623 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 MSRAQ9UJ68 235 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 NOX1Q9Y5S8 564 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 NUMBLQ9Y6R0 609 aa5.02□□□□□ -1.61
SMC4-220ENST00000488017 MGST3O14880 152 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 PJA2O43164 708 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 PRAMEF4O60810 478 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 ITGA10O75578 1167 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 CHN2P52757 468 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 MRPS35P82673 323 aaKnown RBP5.01□□□□□ -1.61
SMC4-220ENST00000488017 SH2D3CQ8N5H7 860 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 ZNF366Q8N895 744 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 OR56A1Q8NGH5 318 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 SNX33Q8WV41 574 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 ZNF428Q96B54 188 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 ALOXE3Q9BYJ1 711 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 IGSF5Q9NSI5 407 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 KLHL11Q9NVR0 708 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 TBCCD1Q9NVR7 557 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 GPRC5DQ9NZD1 345 aa5.01□□□□□ -1.61
SMC4-220ENST00000488017 H2AFY2Q9P0M6 372 aaPredicted RBP5.01□□□□□ -1.61
SMC4-220ENST00000488017 CGB1A6NKQ9 187 aa5□□□□□ -1.61
SMC4-220ENST00000488017 GAS7O60861 476 aa5□□□□□ -1.61
SMC4-220ENST00000488017 ELANEP08246 267 aa5□□□□□ -1.61
SMC4-220ENST00000488017 GTF2F1P35269 517 aaKnown RBP eCLIP5□□□□□ -1.61
SMC4-220ENST00000488017 FLT3LGP49771 235 aa5□□□□□ -1.61
SMC4-220ENST00000488017 PPARAQ07869 468 aa5□□□□□ -1.61
SMC4-220ENST00000488017 SRSF4Q08170 494 aaKnown RBP5□□□□□ -1.61
SMC4-220ENST00000488017 ATXN7L2Q5T6C5 722 aaPredicted RBP5□□□□□ -1.61
SMC4-220ENST00000488017 B3GNTL1Q67FW5 361 aaPredicted RBP5□□□□□ -1.61
SMC4-220ENST00000488017 FAM43AQ8N2R8 423 aa5□□□□□ -1.61
SMC4-220ENST00000488017 MDM1Q8TC05 714 aa5□□□□□ -1.61
SMC4-220ENST00000488017 BOD1Q96IK1 185 aa5□□□□□ -1.61
SMC4-220ENST00000488017 ZNF778Q96MU6 729 aa5□□□□□ -1.61
SMC4-220ENST00000488017 PRSS38A1L453 326 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 F2P00734 622 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 CRHR1P34998 444 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 RBM25P49756 843 aaKnown RBP4.99□□□□□ -1.61
SMC4-220ENST00000488017 CLRN1P58418 232 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 KIAA1614Q5VZ46 1190 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 ACTRT2Q8TDY3 377 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 CEP95Q96GE4 821 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 PAWRQ96IZ0 340 aaKnown RBP4.99□□□□□ -1.61
SMC4-220ENST00000488017 HEPHQ9BQS7 1158 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 REXO4Q9GZR2 422 aaKnown RBP4.99□□□□□ -1.61
SMC4-220ENST00000488017 KLK15Q9H2R5 256 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 GALNT9Q9HCQ5 603 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 CASS4Q9NQ75 786 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 EVLQ9UI08 416 aaPredicted RBP4.99□□□□□ -1.61
SMC4-220ENST00000488017 PRSS50Q9UI38 385 aa4.99□□□□□ -1.61
SMC4-220ENST00000488017 PHC1P78364 1004 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 OCA2Q04671 838 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 FAM47AQ5JRC9 791 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 MFSD14BQ5SR56 506 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 SOGA3Q5TF21 947 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 ABHD15Q6UXT9 468 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 PTF1AQ7RTS3 328 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 GRASPQ7Z6J2 395 aaPredicted RBP4.98□□□□□ -1.61
SMC4-220ENST00000488017 LILRB2Q8N423 598 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 ZNF610Q8N9Z0 462 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 ARPP21Q9UBL0 812 aaPredicted RBP4.98□□□□□ -1.61
SMC4-220ENST00000488017 ZNF70Q9UC06 446 aaPredicted RBP4.98□□□□□ -1.61
SMC4-220ENST00000488017 TMPRSS11EQ9UL52 423 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 DMTF1Q9Y222 760 aa4.98□□□□□ -1.61
SMC4-220ENST00000488017 TGM5O43548 720 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 TMEM127O75204 238 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 RFPL3O75679 317 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 SNRPA1P09661 255 aaKnown RBP4.97□□□□□ -1.61
SMC4-220ENST00000488017 HOXB6P17509 224 aaKnown RBP4.97□□□□□ -1.61
SMC4-220ENST00000488017 SDSP20132 328 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 DSG1Q02413 1049 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 PRAMEF14Q5SWL7 426 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 TSHZ3Q63HK5 1081 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 ZNF788Q6ZQV5 615 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 SLC41A1Q8IVJ1 513 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 OR14C36Q8NHC7 312 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 ZNF480Q8WV37 535 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 FUBP3Q96I24 572 aaKnown RBP eCLIP4.97□□□□□ -1.61
SMC4-220ENST00000488017 UROC1Q96N76 676 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 AIFM2Q9BRQ8 373 aa4.97□□□□□ -1.61
SMC4-220ENST00000488017 RNPEPQ9H4A4 650 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms