RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 DUSP15Q9H1R2 295 aaPredicted RBP13.17□□□□□ -0.3
TRIM56-204ENST00000487252 TMEM9BQ9NQ34 198 aa13.17□□□□□ -0.3
TRIM56-204ENST00000487252 USP9XQ93008 2570 aaPredicted RBP13.16□□□□□ -0.3
TRIM56-204ENST00000487252 TDRD15B5MCY1 1934 aaKnown RBP13.16□□□□□ -0.3
TRIM56-204ENST00000487252 BCLAF3A2AJT9 711 aaKnown RBP13.16□□□□□ -0.3
TRIM56-204ENST00000487252 ZNF862O60290 1169 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 SMARCA1P28370 1054 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 KIF5BP33176 963 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 OR1G1P47890 313 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 SCAPQ12770 1279 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 DRP2Q13474 957 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 FUT10Q6P4F1 479 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 CYB5R4Q7L1T6 521 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 RTL10Q7L3V2 364 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 DEFB124Q8NES8 71 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 SCLT1Q96NL6 688 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 CNNM2Q9H8M5 875 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 POLIQ9UNA4 740 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 MRPS23Q9Y3D9 190 aaKnown RBP13.16□□□□□ -0.3
TRIM56-204ENST00000487252 PCDHB15Q9Y5E8 787 aa13.16□□□□□ -0.3
TRIM56-204ENST00000487252 H0Y626 953 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 DDX39AO00148 427 aaKnown RBP13.15□□□□□ -0.3
TRIM56-204ENST00000487252 TRIM16O95361 564 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 CAVIN2O95810 425 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 PRB1P04280 392 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 PSMC3P17980 439 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 CCINQ13939 588 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 FAM78AQ5JUQ0 283 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 RTP2Q5QGT7 225 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 UBXN11Q5T124 520 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 PRSS55Q6UWB4 352 aaPredicted RBP13.15□□□□□ -0.3
TRIM56-204ENST00000487252 VITQ6UXI7 678 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 NIPA1Q7RTP0 329 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 SLC7A14Q8TBB6 771 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 RRP36Q96EU6 259 aaKnown RBP13.15□□□□□ -0.3
TRIM56-204ENST00000487252 FAM167AQ96KS9 214 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 SENP2Q9HC62 589 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 ZFP14Q9HCL3 533 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 AGPAT5Q9NUQ2 364 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 RAI2Q9Y5P3 530 aa13.15□□□□□ -0.3
TRIM56-204ENST00000487252 A0A087WZ62 844 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 RHOP08100 348 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 CCDC192P0DO97 292 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 CEBPBP17676 345 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 GDI1P31150 447 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 RAB44Q7Z6P3 723 aaPredicted RBP13.14□□□□□ -0.31
TRIM56-204ENST00000487252 SYNPOQ8N3V7 929 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 HNRNPLLQ8WVV9 542 aaKnown RBP13.14□□□□□ -0.31
TRIM56-204ENST00000487252 LRIG1Q96JA1 1093 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 ASB16Q96NS5 453 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 FDXACB1Q9BRP7 624 aaPredicted RBP13.14□□□□□ -0.31
TRIM56-204ENST00000487252 COLEC11Q9BWP8 271 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 INO80BQ9C086 356 aaPredicted RBP13.14□□□□□ -0.31
TRIM56-204ENST00000487252 MIOSQ9NXC5 875 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 ADAM28Q9UKQ2 775 aa13.14□□□□□ -0.31
TRIM56-204ENST00000487252 SHROOM3Q8TF72 1996 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 IGKV6-21A0A0C4DH24 114 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 EXTL3O43909 919 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 MICAL2O94851 1124 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 HOXA11P31270 313 aaPredicted RBP13.13□□□□□ -0.31
TRIM56-204ENST00000487252 TARBP2Q15633 366 aaKnown RBP13.13□□□□□ -0.31
TRIM56-204ENST00000487252 PRSS36Q5K4E3 855 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 AXDND1Q5T1B0 1012 aaPredicted RBP13.13□□□□□ -0.31
TRIM56-204ENST00000487252 ZNF746Q6NUN9 644 aaPredicted RBP13.13□□□□□ -0.31
TRIM56-204ENST00000487252 TRMT1LQ7Z2T5 733 aaKnown RBP13.13□□□□□ -0.31
TRIM56-204ENST00000487252 PIP4P1Q86T03 277 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 ZNF410Q86VK4 478 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 SMAP1Q8IYB5 467 aaPredicted RBP13.13□□□□□ -0.31
TRIM56-204ENST00000487252 LNX1Q8TBB1 728 aaPredicted RBP13.13□□□□□ -0.31
TRIM56-204ENST00000487252 DEPDC1BQ8WUY9 529 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 PIK3R5Q8WYR1 880 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 CEP89Q96ST8 783 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 MKNK1Q9BUB5 465 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 UBN1Q9NPG3 1134 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 VWA8A3KMH1 1905 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 PLXNB3Q9ULL4 1909 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 NCANO14594 1321 aa13.13□□□□□ -0.31
TRIM56-204ENST00000487252 MYBPHLA2RUH7 354 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 ARL5CA6NH57 179 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 UPK3BL1B0FP48 263 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 UPK3BL2E5RIL1 263 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 ADAM12O43184 909 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 OATP04181 439 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 PXNP49023 591 aaPredicted RBP13.12□□□□□ -0.31
TRIM56-204ENST00000487252 MFAP1P55081 439 aaKnown RBP13.12□□□□□ -0.31
TRIM56-204ENST00000487252 CREB5Q02930 508 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 TXNDC11Q6PKC3 985 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 CATSPER4Q7RTX7 472 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 SMG8Q8ND04 991 aaKnown RBP13.12□□□□□ -0.31
TRIM56-204ENST00000487252 UBL7Q96S82 380 aaPredicted RBP13.12□□□□□ -0.31
TRIM56-204ENST00000487252 MAP3K14Q99558 947 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 HNRNPABQ99729 332 aaKnown RBP13.12□□□□□ -0.31
TRIM56-204ENST00000487252 C8orf33Q9H7E9 229 aaPredicted RBP13.12□□□□□ -0.31
TRIM56-204ENST00000487252 TRPV4Q9HBA0 871 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 IFT122Q9HBG6 1241 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 GABBR1Q9UBS5 961 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 PCDHA10Q9Y5I2 948 aa13.12□□□□□ -0.31
TRIM56-204ENST00000487252 URB1O60287 2271 aaKnown RBP13.12□□□□□ -0.31
TRIM56-204ENST00000487252 IGLV3-22A0A075B6J6 115 aa13.11□□□□□ -0.31
TRIM56-204ENST00000487252 SPAARA0A1B0GVQ0 90 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms