RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 ADRA1BP35368 520 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 GYS2P54840 703 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 CLRN1P58418 232 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 NHLH2Q02577 135 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 MUM1L1Q5H9M0 696 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 HECTD2Q5U5R9 776 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 RNF180Q86T96 592 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 FAM43AQ8N2R8 423 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 GPR156Q8NFN8 814 aa4.84□□□□□ -1.63
VPS50-217ENST00000485140 RBM12Q9NTZ6 932 aaKnown RBP4.84□□□□□ -1.63
VPS50-217ENST00000485140 TMEM127O75204 238 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 ALAS1P13196 640 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 KRT4P19013 534 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 DDX6P26196 483 aaKnown RBP eCLIP4.83□□□□□ -1.64
VPS50-217ENST00000485140 BEAN1Q3B7T3 259 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 KRTAP15-1Q3LI76 137 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 ATXN7L2Q5T6C5 722 aaPredicted RBP4.83□□□□□ -1.64
VPS50-217ENST00000485140 Q6ZPA2 131 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 ZNF572Q7Z3I7 529 aaPredicted RBP4.83□□□□□ -1.64
VPS50-217ENST00000485140 PRIMA1Q86XR5 153 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 LYSMD2Q8IV50 215 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 CASKIN2Q8WXE0 1202 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 ORAI2Q96SN7 254 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 SERHL2Q9H4I8 314 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 LANCL2Q9NS86 450 aa4.83□□□□□ -1.64
VPS50-217ENST00000485140 ZAR1LA6NP61 321 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 AHRRA9YTQ3 701 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 AKR1B10O60218 316 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 FOSP01100 380 aaPredicted RBP4.82□□□□□ -1.64
VPS50-217ENST00000485140 BMP5P22003 454 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 FSTL1Q12841 308 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 TRIM25Q14258 630 aaKnown RBP4.82□□□□□ -1.64
VPS50-217ENST00000485140 MUM1Q2TAK8 710 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 DPY19L2P1Q6NXN4 242 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 THNSL2Q86YJ6 484 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 RHOT2Q8IXI1 618 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 LILRA3Q8N6C8 439 aaPredicted RBP4.82□□□□□ -1.64
VPS50-217ENST00000485140 UHRF1Q96T88 793 aaPredicted RBP4.82□□□□□ -1.64
VPS50-217ENST00000485140 ADI1Q9BV57 179 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 ACE2Q9BYF1 805 aaPredicted RBP4.82□□□□□ -1.64
VPS50-217ENST00000485140 RNPEPQ9H4A4 650 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 RIOX1Q9H6W3 641 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 MANSC1Q9H8J5 431 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 TMEM140Q9NV12 185 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 ZNHIT2Q9UHR6 403 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 NOX1Q9Y5S8 564 aa4.82□□□□□ -1.64
VPS50-217ENST00000485140 WASHC2AQ641Q2 1341 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 CENPVL1A0A0U1RR11 272 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 PIPSLA2A3N6 862 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 GRID2IPA4D2P6 1211 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 NEMP1O14524 444 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 NUDT3O95989 172 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 NR4A1P22736 598 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 CD38P28907 300 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 PTPN7P35236 360 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 ZEB1P37275 1124 aaPredicted RBP4.81□□□□□ -1.64
VPS50-217ENST00000485140 PER3P56645 1201 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 RNASE9P60153 205 aaKnown RBP4.81□□□□□ -1.64
VPS50-217ENST00000485140 STRN3Q13033 797 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 CT83Q5H943 113 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 Q6YL49 198 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 CLRN3Q8NCR9 226 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 RIN2Q8WYP3 895 aaPredicted RBP4.81□□□□□ -1.64
VPS50-217ENST00000485140 CAVIN3Q969G5 261 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 EAF2Q96CJ1 260 aaPredicted RBP4.81□□□□□ -1.64
VPS50-217ENST00000485140 BOD1Q96IK1 185 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 MLST8Q9BVC4 326 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 IFT122Q9HBG6 1241 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 TOPORSQ9NS56 1045 aaPredicted RBP4.81□□□□□ -1.64
VPS50-217ENST00000485140 RNF181Q9P0P0 153 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 DPP7Q9UHL4 492 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 INSL6Q9Y581 213 aa4.81□□□□□ -1.64
VPS50-217ENST00000485140 GOLGA8AA7E2F4 631 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 NCR1O76036 304 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 CDKL5O76039 1030 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 NDUFA10O95299 355 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 POMCP01189 267 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 LPLP06858 475 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 MALLQ13021 153 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 ADRM1Q16186 407 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 PRAMEF14Q5SWL7 426 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 AGAP9Q5VTM2 703 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 RNF219Q5W0B1 726 aaPredicted RBP4.8□□□□□ -1.64
VPS50-217ENST00000485140 SYCE2Q6PIF2 218 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 FOXR2Q6PJQ5 311 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 ABHD15Q6UXT9 468 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 KRT26Q7Z3Y9 468 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 SPATS2Q86XZ4 545 aaKnown RBP4.8□□□□□ -1.64
VPS50-217ENST00000485140 CPEB3Q8NE35 698 aaKnown RBP4.8□□□□□ -1.64
VPS50-217ENST00000485140 MDM1Q8TC05 714 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 FUBP3Q96I24 572 aaKnown RBP eCLIP4.8□□□□□ -1.64
VPS50-217ENST00000485140 SAP30BPQ9UHR5 308 aaKnown RBP4.8□□□□□ -1.64
VPS50-217ENST00000485140 DMTF1Q9Y222 760 aa4.8□□□□□ -1.64
VPS50-217ENST00000485140 MARCH11A6NNE9 402 aa4.79□□□□□ -1.64
VPS50-217ENST00000485140 ORC4O43929 436 aa4.79□□□□□ -1.64
VPS50-217ENST00000485140 CFIP05156 583 aa4.79□□□□□ -1.64
VPS50-217ENST00000485140 ATP5JP18859 108 aa4.79□□□□□ -1.64
VPS50-217ENST00000485140 PROZP22891 400 aa4.79□□□□□ -1.64
VPS50-217ENST00000485140 ELLP55199 621 aaPredicted RBP4.79□□□□□ -1.64
VPS50-217ENST00000485140 MGAT2Q10469 447 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms