RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 C7orf25Q9BPX7 421 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 GPR87Q9BY21 358 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 KCNH6Q9H252 994 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 MANSC1Q9H8J5 431 aa7.9□□□□□ -1.14
USP40-213ENST00000483216 XDHP47989 1333 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 TBKBP1A7MCY6 615 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 PJA2O43164 708 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 ALOX15P16050 662 aaPredicted RBP7.89□□□□□ -1.15
USP40-213ENST00000483216 KIF23Q02241 960 aaPredicted RBP7.89□□□□□ -1.15
USP40-213ENST00000483216 CRHR2Q13324 411 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 USP39Q53GS9 565 aaKnown RBP7.89□□□□□ -1.15
USP40-213ENST00000483216 XYLT1Q86Y38 959 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 TMPRSS6Q8IU80 811 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 CASKIN2Q8WXE0 1202 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 EXTL1Q92935 676 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 HDAC10Q969S8 669 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 CPEB1Q9BZB8 566 aaKnown RBP7.89□□□□□ -1.15
USP40-213ENST00000483216 SENP6Q9GZR1 1112 aaPredicted RBP7.89□□□□□ -1.15
USP40-213ENST00000483216 ZNF703Q9H7S9 590 aaPredicted RBP7.89□□□□□ -1.15
USP40-213ENST00000483216 TCF7L1Q9HCS4 588 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 IPPQ9Y573 584 aa7.89□□□□□ -1.15
USP40-213ENST00000483216 PRR5-ARHGAP8B1AHC4 643 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 ZRANB2O95218 330 aaKnown RBP eCLIP7.88□□□□□ -1.15
USP40-213ENST00000483216 HK1P19367 917 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 PTH1RQ03431 593 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 CNGB1Q14028 1251 aaPredicted RBP7.88□□□□□ -1.15
USP40-213ENST00000483216 VPS72Q15906 364 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 BMT2Q1RMZ1 405 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 ANKS6Q68DC2 871 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 DRICH1Q6PGQ1 229 aaPredicted RBP7.88□□□□□ -1.15
USP40-213ENST00000483216 RNF207Q6ZRF8 634 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 MIGA2Q7L4E1 593 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 C1orf210Q8IVY1 113 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 CMTR2Q8IYT2 770 aaKnown RBP7.88□□□□□ -1.15
USP40-213ENST00000483216 CPA6Q8N4T0 437 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 IL17DQ8TAD2 202 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 TMEM140Q9NV12 185 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 MOCS1Q9NZB8 636 aa7.88□□□□□ -1.15
USP40-213ENST00000483216 CXorf49A8MYA2 514 aaPredicted RBP7.87□□□□□ -1.15
USP40-213ENST00000483216 HTRA2O43464 458 aaPredicted RBP7.87□□□□□ -1.15
USP40-213ENST00000483216 TTF1Q15361 905 aaPredicted RBP7.87□□□□□ -1.15
USP40-213ENST00000483216 ZXDCQ2QGD7 858 aaPredicted RBP7.87□□□□□ -1.15
USP40-213ENST00000483216 SPRED1Q7Z699 444 aa7.87□□□□□ -1.15
USP40-213ENST00000483216 ANKRD13AQ8IZ07 590 aa7.87□□□□□ -1.15
USP40-213ENST00000483216 AJAP1Q9UKB5 411 aaPredicted RBP7.87□□□□□ -1.15
USP40-213ENST00000483216 LIMCH1Q9UPQ0 1083 aa7.87□□□□□ -1.15
USP40-213ENST00000483216 LUC7L2Q9Y383 392 aaKnown RBP7.87□□□□□ -1.15
USP40-213ENST00000483216 WNT10BO00744 389 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 TEX33O43247 280 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 SNRPA1P09661 255 aaKnown RBP7.86□□□□□ -1.15
USP40-213ENST00000483216 INSRRP14616 1297 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 EDNRBP24530 442 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 MCL1Q07820 350 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 CSRP2Q16527 193 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 NRN1LQ496H8 165 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 RHOT1Q8IXI2 618 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 CSRNP2Q9H175 543 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 AASDHPPTQ9NRN7 309 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 SERPINB13Q9UIV8 391 aa7.86□□□□□ -1.15
USP40-213ENST00000483216 CCDC154A6NI56 674 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 SGTAO43765 313 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 AMY1AP04745 511 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 CLRN1P58418 232 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 ATP8B2P98198 1209 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 RRP12Q5JTH9 1297 aaKnown RBP7.85□□□□□ -1.15
USP40-213ENST00000483216 AFMIDQ63HM1 303 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 OTUD7BQ6GQQ9 843 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 DBX2Q6ZNG2 339 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 MIER2Q8N344 545 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 FBXO18Q8NFZ0 1043 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 ZFP28Q8NHY6 868 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 SLC35B2Q8TB61 432 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 CCHCR1Q8TD31 782 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 STON2Q8WXE9 905 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 PGBD4Q96DM1 585 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 HOOK2Q96ED9 719 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 LDAHQ9H6V9 325 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 SPON1Q9HCB6 807 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 CEP72Q9P209 647 aa7.85□□□□□ -1.15
USP40-213ENST00000483216 E2F8A0AVK6 867 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 GPR32O75388 356 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 FPR1P21462 350 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 MGAT1P26572 445 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 PCSK1P29120 753 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 MTM1Q13496 603 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 UAP1L1Q3KQV9 507 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 PLEKHG6Q3KR16 790 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 C3orf36Q3SXR2 165 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 EFCAB12Q6NXP0 572 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 TFAP2CQ92754 450 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 KRTAP9-3Q9BYQ3 159 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 PARPBPQ9NWS1 579 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 FAM30AQ9NZY2 134 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 PCDHA13Q9Y5I0 950 aa7.84□□□□□ -1.15
USP40-213ENST00000483216 MYBBP1AQ9BQG0 1328 aaKnown RBP7.83□□□□□ -1.16
USP40-213ENST00000483216 GRXCR1A8MXD5 290 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 MATN3O15232 486 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 ABLIM3O94929 683 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 VCAM1P19320 739 aa7.83□□□□□ -1.16
USP40-213ENST00000483216 DDCP20711 480 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms