RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 NGRNQ9NPE2 291 aaKnown RBP17.09■□□□□ 0.33
HMGA1-206ENST00000478214 CLDND1Q9NY35 253 aa17.09■□□□□ 0.33
HMGA1-206ENST00000478214 ANKFY1Q9P2R3 1169 aa17.09■□□□□ 0.33
HMGA1-206ENST00000478214 TBX20Q9UMR3 447 aa17.09■□□□□ 0.33
HMGA1-206ENST00000478214 ATG2AQ2TAZ0 1938 aa17.08■□□□□ 0.33
HMGA1-206ENST00000478214 HIDE1A8MVS5 230 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 F8W810 466 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 PER2O15055 1255 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 LINC01565O15544 149 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 NCK2O43639 380 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 TOM1L1O75674 476 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 MCF2P10911 925 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 GRM5P41594 1212 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 KCNQ1P51787 676 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 OSTNP61366 133 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 KRT85P78386 507 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 AAK1Q2M2I8 961 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 CTC1Q2NKJ3 1217 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 RESP18Q5W5W9 173 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 DDX53Q86TM3 631 aaKnown RBP17.08■□□□□ 0.32
HMGA1-206ENST00000478214 VPS52Q8N1B4 723 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 LEO1Q8WVC0 666 aaPredicted RBP17.08■□□□□ 0.32
HMGA1-206ENST00000478214 DHX58Q96C10 678 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 BICD1Q96G01 975 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 TLE6Q9H808 572 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 MARCH5Q9NX47 278 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 CACNG4Q9UBN1 327 aa17.08■□□□□ 0.32
HMGA1-206ENST00000478214 H3BQ06 376 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-206ENST00000478214 POLR2DO15514 142 aaKnown RBP17.07■□□□□ 0.32
HMGA1-206ENST00000478214 IDEP14735 1019 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 LTBRP36941 435 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 GTF2BQ00403 316 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 ADAM15Q13444 863 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 ZC2HC1CQ53FD0 456 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-206ENST00000478214 IQUBQ8NA54 791 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 AUTS2Q8WXX7 1259 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 RABGGTAQ92696 567 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 SPATA32Q96LK8 384 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 CCDC94Q9BW85 323 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-206ENST00000478214 HAPLN2Q9GZV7 340 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 ZBP1Q9H171 429 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 KBTBD4Q9NVX7 518 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 FAM13BQ9NYF5 915 aa17.07■□□□□ 0.32
HMGA1-206ENST00000478214 MYH11P35749 1972 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 HNRNPDLO14979 420 aaKnown RBP17.06■□□□□ 0.32
HMGA1-206ENST00000478214 CLDN3O15551 220 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 NR1I2O75469 434 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 CXCL14O95715 111 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 THP07101 528 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 GAP43P17677 238 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 SCP2P22307 547 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 CA8P35219 290 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 MATR3P43243 847 aaKnown RBP eCLIP17.06■□□□□ 0.32
HMGA1-206ENST00000478214 LIG4P49917 911 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 DLX2Q07687 328 aaPredicted RBP17.06■□□□□ 0.32
HMGA1-206ENST00000478214 MCL1Q07820 350 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 TUSC3Q13454 348 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 SMC1AQ14683 1233 aaKnown RBP17.06■□□□□ 0.32
HMGA1-206ENST00000478214 NOLC1Q14978 699 aaKnown RBP eCLIP17.06■□□□□ 0.32
HMGA1-206ENST00000478214 NAB2Q15742 525 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 DUSP6Q16828 381 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 SEZ6Q53EL9 994 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 GLRA4Q5JXX5 417 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 ZNF720Q7Z2F6 126 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 MAP4K3Q8IVH8 894 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 EFHBQ8N7U6 833 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 MRPL43Q8N983 215 aaKnown RBP17.06■□□□□ 0.32
HMGA1-206ENST00000478214 PAAF1Q9BRP4 392 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 TNMDQ9H2S6 317 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 CUEDC2Q9H467 287 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 ST6GALNAC4Q9H4F1 302 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 TBC1D7Q9P0N9 293 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 SEL1LQ9UBV2 794 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 ATP6V1DQ9Y5K8 247 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 TTC28Q96AY4 2481 aa17.06■□□□□ 0.32
HMGA1-206ENST00000478214 FRMD3A2A2Y4 597 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 C2orf71A6NGG8 1288 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 CASTOR2A6NHX0 329 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 MEFVO15553 781 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 TBX10O75333 385 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 GLP2RO95838 553 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 PIGRP01833 764 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 CTSAP10619 480 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 BMP1P13497 986 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 YARSP54577 528 aaKnown RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 RBM10P98175 930 aaKnown RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 LEXMQ3ZCV2 418 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 HERC4Q5GLZ8 1057 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 SLC39A4Q6P5W5 647 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 ACAP3Q96P50 834 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 PPP1R10Q96QC0 940 aaKnown RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 COLEC11Q9BWP8 271 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 COL25A1Q9BXS0 654 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 MRPL44Q9H9J2 332 aaKnown RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 TOPORSQ9NS56 1045 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-206ENST00000478214 PANK4Q9NVE7 773 aa17.05■□□□□ 0.32
HMGA1-206ENST00000478214 SMIM28A0A1B0GU29 152 aa17.04■□□□□ 0.32
HMGA1-206ENST00000478214 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.04■□□□□ 0.32
HMGA1-206ENST00000478214 PPP1R37O75864 691 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms