RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ZC3H11AO75152 810 aaKnown RBP eCLIP13.9□□□□□ -0.18
VPS13D-205ENST00000473099 NOL4O94818 638 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 IL18RAPO95256 599 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 DARSP14868 501 aaKnown RBP13.9□□□□□ -0.18
VPS13D-205ENST00000473099 UCHL3P15374 230 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 SLC9A1P19634 815 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 EIF4BP23588 611 aaKnown RBP13.9□□□□□ -0.18
VPS13D-205ENST00000473099 ACOT2P49753 483 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CRYBB1P53674 252 aaPredicted RBP13.9□□□□□ -0.18
VPS13D-205ENST00000473099 POLR2FP61218 127 aaKnown RBP13.9□□□□□ -0.18
VPS13D-205ENST00000473099 DLG4P78352 724 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 PPP3CAQ08209 521 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 GOLGA8FQ08AF8 430 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 GOLGA8DPQ0D2H9 430 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CBWD6Q4V339 395 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 EPC2Q52LR7 807 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CBWD3Q5JTY5 395 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CBWD5Q5RIA9 395 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 C1orf220Q5T0J3 134 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 SMYD5Q6GMV2 418 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CRELD2Q6UXH1 353 aaPredicted RBP13.9□□□□□ -0.18
VPS13D-205ENST00000473099 RRAGAQ7L523 313 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CCDC170Q8IYT3 715 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 ZSWIM2Q8NEG5 633 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 DNAJB3Q8WWF6 145 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 BAP1Q92560 729 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CCDC127Q96BQ5 260 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 SPAG5Q96R06 1193 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 CGRRF1Q99675 332 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 HAPLN2Q9GZV7 340 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 INTS2Q9H0H0 1204 aaKnown RBP13.9□□□□□ -0.18
VPS13D-205ENST00000473099 SPTLC3Q9NUV7 552 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 APEX2Q9UBZ4 518 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 PTCH2Q9Y6C5 1203 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 MYH10P35580 1976 aa13.9□□□□□ -0.18
VPS13D-205ENST00000473099 RNF225M0QZC1 329 aaPredicted RBP13.89□□□□□ -0.19
VPS13D-205ENST00000473099 FAM189A1O60320 539 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 TSPAN1O60635 241 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 CLTAP09496 248 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 CCDC172P0C7W6 258 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 DLATP10515 647 aaKnown RBP13.89□□□□□ -0.19
VPS13D-205ENST00000473099 ARF4P18085 180 aaPredicted RBP13.89□□□□□ -0.19
VPS13D-205ENST00000473099 TNNI1P19237 187 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 CYLC1P35663 651 aaPredicted RBP13.89□□□□□ -0.19
VPS13D-205ENST00000473099 GCLMP48507 274 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 KIZQ2M2Z5 673 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 FAM47CQ5HY64 1035 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 SFMBT2Q5VUG0 894 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 NOTUMQ6P988 496 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 RUFY4Q6ZNE9 571 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 CATSPER4Q7RTX7 472 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 WDR49Q8IV35 697 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 FBXL13Q8NEE6 735 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 PLEKHO2Q8TD55 490 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 GLT1D1Q96MS3 346 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 TMEM117Q9H0C3 514 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 CDT1Q9H211 546 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 NLRC4Q9NPP4 1024 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 AIPL1Q9NZN9 384 aa13.89□□□□□ -0.19
VPS13D-205ENST00000473099 CPSF3Q9UKF6 684 aaKnown RBP13.89□□□□□ -0.19
VPS13D-205ENST00000473099 BZW2Q9Y6E2 419 aaKnown RBP13.89□□□□□ -0.19
VPS13D-205ENST00000473099 A0A1B0GUA9 196 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 SSU72P8A0A1W2PR75 194 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 LRRC53A6NM62 1247 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 EPHB6O15197 1021 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 B4GALT5O43286 388 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 CAND2O75155 1236 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 IPO7O95373 1038 aaKnown RBP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 CCDC175P0C221 793 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 IQCF3P0C7M6 154 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 HARSP12081 509 aaKnown RBP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 ACLYP53396 1101 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 MRPS6P82932 125 aaKnown RBP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 SLC9C1Q4G0N8 1177 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 DPY19L2P1Q6NXN4 242 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 ZBTB33Q86T24 672 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 SERINC5Q86VE9 423 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 NT5DC4Q86YG4 428 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 CCAR2Q8N163 923 aaKnown RBP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 LMO3Q8TAP4 145 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 ZNF668Q96K58 619 aaPredicted RBP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 STK33Q9BYT3 514 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 PDZD7Q9H5P4 517 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 RPF1Q9H9Y2 349 aaKnown RBP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 SIX2Q9NPC8 291 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 PTPN22Q9Y2R2 807 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 TRPV2Q9Y5S1 764 aa13.88□□□□□ -0.19
VPS13D-205ENST00000473099 TDRD15B5MCY1 1934 aaKnown RBP13.88□□□□□ -0.19
VPS13D-205ENST00000473099 TTLL13PA6NNM8 815 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 KBTBD13C9JR72 458 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 KIF2AO00139 706 aaPredicted RBP13.87□□□□□ -0.19
VPS13D-205ENST00000473099 B4GALT4O60513 344 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 TUBB4AP04350 444 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 SERPING1P05155 500 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 FERP16591 822 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 ANXA13P27216 316 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 STAT1P42224 750 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 ITGA7Q13683 1181 aa13.87□□□□□ -0.19
VPS13D-205ENST00000473099 RAPGEF1Q13905 1077 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms