RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 HSPBP1Q9NZL4 362 aa16.14■□□□□ 0.17
COL9A3-209ENST00000469852 KLK14Q9P0G3 267 aa16.14■□□□□ 0.17
COL9A3-209ENST00000469852 TRAF3IP3Q9Y228 551 aa16.14■□□□□ 0.17
COL9A3-209ENST00000469852 PCDHB7Q9Y5E2 793 aa16.14■□□□□ 0.17
COL9A3-209ENST00000469852 CITO14578 2027 aa16.14■□□□□ 0.17
COL9A3-209ENST00000469852 DGKIO75912 1065 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 KIF20AO95235 890 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 GJB5O95377 273 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 EOMESO95936 686 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 SKIP12755 728 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 CCNE1P24864 410 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 MLH1P40692 756 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 RABGGTBP53611 331 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 STX17P56962 302 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 ZSCAN23Q3MJ62 389 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 ANKRD40Q6AI12 368 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 C11orf57Q6ZUT1 292 aaPredicted RBP16.13■□□□□ 0.17
COL9A3-209ENST00000469852 HS2ST1Q7LGA3 356 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 C12orf56Q8IXR9 622 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 NOC3LQ8WTT2 800 aaKnown RBP16.13■□□□□ 0.17
COL9A3-209ENST00000469852 NELFBQ8WX92 580 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 P2RX5Q93086 422 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 EEF2KMTQ96G04 330 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 DUSP9Q99956 384 aaKnown RBP16.13■□□□□ 0.17
COL9A3-209ENST00000469852 FAM213AQ9BRX8 229 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 FUCA2Q9BTY2 467 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 GTPBP4Q9BZE4 634 aaKnown RBP16.13■□□□□ 0.17
COL9A3-209ENST00000469852 MTIF3Q9H2K0 278 aaKnown RBP16.13■□□□□ 0.17
COL9A3-209ENST00000469852 DMAC2Q9NW81 257 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 MIOSQ9NXC5 875 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 HCSTQ9UBK5 93 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 PARP2Q9UGN5 583 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 CPSF3Q9UKF6 684 aaKnown RBP16.13■□□□□ 0.17
COL9A3-209ENST00000469852 LRFN2Q9ULH4 789 aa16.13■□□□□ 0.17
COL9A3-209ENST00000469852 PDCD11Q14690 1871 aaKnown RBP16.13■□□□□ 0.17
COL9A3-209ENST00000469852 PSMA7O14818 248 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 OFD1O75665 1012 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 NR3C1P04150 777 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 CXCL8P10145 99 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 MYOGP15173 224 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 CASP4P49662 377 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 TYRO3Q06418 890 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 ENOX2Q16206 610 aaKnown RBP16.12■□□□□ 0.17
COL9A3-209ENST00000469852 SLC10A6Q3KNW5 377 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 PAN2Q504Q3 1202 aaKnown RBP16.12■□□□□ 0.17
COL9A3-209ENST00000469852 TTI2Q6NXR4 508 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 SASS6Q6UVJ0 657 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 CBWD2Q8IUF1 395 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 TMEM130Q8N3G9 435 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 MLKLQ8NB16 471 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 GSTCDQ8NEC7 633 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 PHOSPHO2Q8TCD6 241 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 ZNF689Q96CS4 500 aaPredicted RBP16.12■□□□□ 0.17
COL9A3-209ENST00000469852 PGBD4Q96DM1 585 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 DHTKD1Q96HY7 919 aaPredicted RBP16.12■□□□□ 0.17
COL9A3-209ENST00000469852 CASD1Q96PB1 797 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 GAD1Q99259 594 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 RSAD1Q9HA92 442 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 MTMR10Q9NXD2 777 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 PLAGL2Q9UPG8 496 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 INPP5FQ9Y2H2 1132 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 KIAA1671Q9BY89 1806 aa16.12■□□□□ 0.17
COL9A3-209ENST00000469852 LCHNA4D1U4 455 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 ARL5CA6NH57 179 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 TBKBP1A7MCY6 615 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 DLL1O00548 723 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 CALUO43852 315 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 EXTL3O43909 919 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 B4GALT3O60512 393 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 ARHGEF15O94989 841 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 ADRB2P07550 413 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 CLTAP09496 248 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 PBX2P40425 430 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 SNRPFP62306 86 aaKnown RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 HTRA4P83105 476 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 PAK1Q13153 545 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 STIM1Q13586 685 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 APBB1IPQ7Z5R6 666 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 GPD1LQ8N335 351 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 FAM84AQ96KN4 292 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 SNX27Q96L92 541 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 FBXL18Q96ME1 805 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 ACAP3Q96P50 834 aa16.11■□□□□ 0.17
COL9A3-209ENST00000469852 CCDC94Q9BW85 323 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 GZF1Q9H116 711 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 CGNQ9P2M7 1197 aaKnown RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 TDRD15B5MCY1 1934 aaKnown RBP16.11■□□□□ 0.17
COL9A3-209ENST00000469852 PTGESO14684 152 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 NR2F2P24468 414 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 PPP1R2P41236 205 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 SCNN1GP51170 649 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 SPAG1Q07617 926 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 STX1AQ16623 288 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 NFIL3Q16649 462 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 EDRF1Q3B7T1 1238 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 GLRA4Q5JXX5 417 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 ALKAL1Q6UXT8 129 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 LRRC55Q6ZSA7 311 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 SLC9A9Q8IVB4 645 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 ZC3H3Q8IXZ2 948 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms