RNA–Protein interactions for RNA: ENST00000466415.1

VPS16-206, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS16, Length 708 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-206ENST00000466415 TMEM40Q8WWA1 233 aa13.17□□□□□ -0.3
VPS16-206ENST00000466415 DHX38Q92620 1227 aaKnown RBP13.17□□□□□ -0.3
VPS16-206ENST00000466415 FAM212AQ96EL1 285 aa13.17□□□□□ -0.3
VPS16-206ENST00000466415 CCDC94Q9BW85 323 aaPredicted RBP13.17□□□□□ -0.3
VPS16-206ENST00000466415 GCNT4Q9P109 453 aa13.17□□□□□ -0.3
VPS16-206ENST00000466415 NOC2LQ9Y3T9 749 aaKnown RBP13.17□□□□□ -0.3
VPS16-206ENST00000466415 GTPBP10A4D1E9 387 aaKnown RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 AKR1B15C9JRZ8 316 aaPredicted RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 GPR182O15218 404 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 P4HA2O15460 535 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 PQBP1O60828 265 aaKnown RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 CLSTN1O94985 981 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 IL18RAPO95256 599 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 CHRNA1P02708 482 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 CLTAP09496 248 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 STAG3L1P0CL83 205 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 GHRP10912 638 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 CAPN2P17655 700 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 GTF2H1P32780 548 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 TNFSF9P41273 254 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 GJA8P48165 433 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 GCLMP48507 274 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 ATN1P54259 1190 aaPredicted RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 DLG4P78352 724 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 TRIM71Q2Q1W2 868 aaKnown RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 KRT39Q6A163 491 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 TWF2Q6IBS0 349 aaKnown RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 CRELD2Q6UXH1 353 aaPredicted RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 CNGA4Q8IV77 575 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 FAM126BQ8IXS8 530 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 CPLX3Q8WVH0 158 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 CGRRF1Q99675 332 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 CRACR2AQ9BSW2 395 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 TMEM8AQ9HCN3 771 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 PRDM10Q9NQV6 1147 aa13.16□□□□□ -0.3
VPS16-206ENST00000466415 FAM207AQ9NSI2 230 aaPredicted RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 CPSF3Q9UKF6 684 aaKnown RBP13.16□□□□□ -0.3
VPS16-206ENST00000466415 TRIP12Q14669 1992 aaPredicted RBP13.15□□□□□ -0.3
VPS16-206ENST00000466415 CKBP12277 381 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 ZSCAN20P17040 1043 aaPredicted RBP13.15□□□□□ -0.3
VPS16-206ENST00000466415 GRM5P41594 1212 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 KLK7P49862 253 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 CDK7P50613 346 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 AP3M2P53677 418 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 YARSP54577 528 aaKnown RBP13.15□□□□□ -0.3
VPS16-206ENST00000466415 PPP3CAQ08209 521 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 RBL2Q08999 1139 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 TBX2Q13207 712 aaPredicted RBP13.15□□□□□ -0.3
VPS16-206ENST00000466415 BIRC3Q13489 604 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 TSR1Q2NL82 804 aaKnown RBP13.15□□□□□ -0.3
VPS16-206ENST00000466415 CBWD6Q4V339 395 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 CBWD3Q5JTY5 395 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 FAM26DQ5JW98 314 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 FBXO47Q5MNV8 452 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 CBWD5Q5RIA9 395 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 ZNF618Q5T7W0 954 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 CACNA2D4Q7Z3S7 1137 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 HACE1Q8IYU2 909 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 CEP120Q8N960 986 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 USP38Q8NB14 1042 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 ZNF397Q8NF99 534 aaPredicted RBP13.15□□□□□ -0.3
VPS16-206ENST00000466415 PLEKHO2Q8TD55 490 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 ACAP3Q96P50 834 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 C11orf49Q9H6J7 331 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 PDE11AQ9HCR9 933 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 TOPORSQ9NS56 1045 aaPredicted RBP13.15□□□□□ -0.3
VPS16-206ENST00000466415 ST3GAL5Q9UNP4 418 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 SIK3Q9Y2K2 1263 aa13.15□□□□□ -0.3
VPS16-206ENST00000466415 DCDC2CA8MYV0 355 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 FAM189A1O60320 539 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 MFAP3LO75121 409 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 PHACTR2O75167 634 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 GYPCP04921 128 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 TMEM191BP0C7N4 346 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 CXCL8P10145 99 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 HOXA11P31270 313 aaPredicted RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 CASP14P31944 242 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 PIK3CAP42336 1068 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 POU5F1Q01860 360 aaKnown RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 ENOX2Q16206 610 aaKnown RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 HS1BP3Q53T59 392 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 FIGNQ5HY92 759 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 LMBRD2Q68DH5 695 aaPredicted RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 SLC39A5Q6ZMH5 540 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 LRRC8DQ7L1W4 858 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 WDR49Q8IV35 697 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 ANKRD36BP1Q96IX9 119 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 POP1Q99575 1024 aaKnown RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 APOL6Q9BWW8 343 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 EIF2AQ9BY44 585 aaKnown RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 MCOLN1Q9GZU1 580 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 TMEM117Q9H0C3 514 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 INTS2Q9H0H0 1204 aaKnown RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 CHST12Q9NRB3 414 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 LUC7L2Q9Y383 392 aaKnown RBP13.14□□□□□ -0.31
VPS16-206ENST00000466415 SQORQ9Y6N5 450 aa13.14□□□□□ -0.31
VPS16-206ENST00000466415 A0A1W2PQJ5 194 aa13.13□□□□□ -0.31
VPS16-206ENST00000466415 TNNC2P02585 160 aa13.13□□□□□ -0.31
VPS16-206ENST00000466415 SELPP16109 830 aa13.13□□□□□ -0.31
VPS16-206ENST00000466415 CD52P31358 61 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms