RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 CHRDQ9H2X0 955 aa10.9□□□□□ -0.66
USP39-212ENST00000465514 PLEKHA4Q9H4M7 779 aa10.9□□□□□ -0.66
USP39-212ENST00000465514 RXFP3Q9NSD7 469 aa10.9□□□□□ -0.66
USP39-212ENST00000465514 PCDHA4Q9UN74 947 aa10.9□□□□□ -0.66
USP39-212ENST00000465514 CYP3A7-CYP3A51PA0A087WV96 503 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 TMEM150BA6NC51 233 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 SHISA7A6NL88 538 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 TAF4O00268 1085 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 TGM5O43548 720 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 HRO43593 1189 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 OFD1O75665 1012 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 DDHD2O94830 711 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 REC8O95072 547 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 STBD1O95210 358 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 TDP2O95551 362 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 CYP3A7P24462 503 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 GLUD2P49448 558 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 NTHL1P78549 312 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 FOXC1Q12948 553 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 TOB2Q14106 344 aaPredicted RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 CCDC6Q16204 474 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 MTERF2Q49AM1 385 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 XKR3Q5GH77 459 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 STPG1Q5TH74 334 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 TWF2Q6IBS0 349 aaKnown RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 RUFY3Q7L099 469 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 GRASPQ7Z6J2 395 aaPredicted RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 GLYCTKQ8IVS8 523 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 TRIM22Q8IYM9 498 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 BLIDQ8IZY5 108 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 C12orf50Q8NA57 414 aaPredicted RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 RDM1Q8NG50 284 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 HDAC7Q8WUI4 952 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 ZCCHC14Q8WYQ9 949 aaKnown RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 FGF13Q92913 245 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 CEP89Q96ST8 783 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 SH2D3AQ9BRG2 576 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 LARP6Q9BRS8 491 aaKnown RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 PHF20Q9BVI0 1012 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 ADAM33Q9BZ11 813 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 GCOM2Q9BZD3 368 aaPredicted RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 C22orf23Q9BZE7 217 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 HEBP1Q9NRV9 189 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 SEPT9Q9UHD8 586 aaPredicted RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 NDRG2Q9UN36 371 aaKnown RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 SSX2IPQ9Y2D8 614 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 FAN1Q9Y2M0 1017 aa10.89□□□□□ -0.67
USP39-212ENST00000465514 MRPS17Q9Y2R5 130 aaKnown RBP10.89□□□□□ -0.67
USP39-212ENST00000465514 A0A087WZ62 844 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 IGKV6-21A0A0C4DH24 114 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 DDX11L8A8MPP1 907 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 CHURC1-FNTBB4DL54 471 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 M0R2N6 131 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 NRP1O14786 923 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 GAS2O43903 313 aaKnown RBP10.88□□□□□ -0.67
USP39-212ENST00000465514 FNTBP49356 437 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 DNM2P50570 870 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 CCR3P51677 355 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 AFF1P51825 1210 aaKnown RBP10.88□□□□□ -0.67
USP39-212ENST00000465514 CDC42EP1Q00587 391 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 B3GNT9Q6UX72 402 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 ZNF687Q8N1G0 1237 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 FAM160A2Q8N612 972 aaPredicted RBP10.88□□□□□ -0.67
USP39-212ENST00000465514 URGCPQ8TCY9 931 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 MBOAT7Q96N66 472 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 FDXACB1Q9BRP7 624 aaPredicted RBP10.88□□□□□ -0.67
USP39-212ENST00000465514 TRAIPQ9BWF2 469 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 LSM14BQ9BX40 385 aaKnown RBP10.88□□□□□ -0.67
USP39-212ENST00000465514 RXFP1Q9HBX9 757 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 ZSWIM6Q9HCJ5 1215 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 CHST12Q9NRB3 414 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 MARCH5Q9NX47 278 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 PRG3Q9Y2Y8 225 aaPredicted RBP10.88□□□□□ -0.67
USP39-212ENST00000465514 EML5Q05BV3 1969 aa10.88□□□□□ -0.67
USP39-212ENST00000465514 CPLX1O14810 134 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 MAFO75444 373 aaPredicted RBP10.87□□□□□ -0.67
USP39-212ENST00000465514 ZMYND10O75800 440 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 DEXIO95424 95 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 ALDH2P05091 517 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 SKIP12755 728 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 RBM25P49756 843 aaKnown RBP10.87□□□□□ -0.67
USP39-212ENST00000465514 SATB1Q01826 763 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 STK3Q13188 491 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 NPY5RQ15761 445 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 MAMSTRQ6ZN01 415 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 RHPN2Q8IUC4 686 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 RNF168Q8IYW5 571 aaPredicted RBP10.87□□□□□ -0.67
USP39-212ENST00000465514 DAGLBQ8NCG7 672 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 ITFG1Q8TB96 612 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 ETNPPLQ8TBG4 499 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 GATA6Q92908 595 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 ZNF274Q96GC6 653 aaPredicted RBP10.87□□□□□ -0.67
USP39-212ENST00000465514 B3GALT6Q96L58 329 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 AIFM3Q96NN9 605 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 FAM193BQ96PV7 902 aaPredicted RBP10.87□□□□□ -0.67
USP39-212ENST00000465514 TMEM175Q9BSA9 504 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 IER2Q9BTL4 223 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 FAM105AQ9NUU6 356 aa10.87□□□□□ -0.67
USP39-212ENST00000465514 SUCLA2Q9P2R7 463 aaPredicted RBP10.87□□□□□ -0.67
USP39-212ENST00000465514 WASF3Q9UPY6 502 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms