RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 KIAA1328Q86T90 577 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 NLRP10Q86W26 655 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ZNF227Q86WZ6 799 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 SCUBE1Q8IWY4 988 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 MARCH10Q8NA82 808 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 FATE1Q969F0 183 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 OSBP2Q969R2 916 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 RBM41Q96IZ5 413 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 PSKH2Q96QS6 385 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 SLC13A1Q9BZW2 595 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 VTA1Q9NP79 307 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 CRTAC1Q9NQ79 661 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 INTS7Q9NVH2 962 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 DNAJB12Q9NXW2 375 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ZNF112Q9UJU3 913 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TMED5Q9Y3A6 229 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 MRPL11Q9Y3B7 192 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 ANGPTL3Q9Y5C1 460 aa5.23□□□□□ -1.57
CCDC88A-209ENST00000456975 TNS2Q63HR2 1409 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 NPC1L1Q9UHC9 1359 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 B4GALT4O60513 344 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 OLFM2O95897 454 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 PGRP06401 933 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 S100A6P06703 90 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 MUTP22033 750 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 SERPINB3P29508 390 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 PBLDP30039 288 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 GRK4P32298 578 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 TUFMP49411 452 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 GSTM4Q03013 218 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 PLCB4Q15147 1175 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 PPP1R7Q15435 360 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 DACT2Q5SW24 774 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 SYDE2Q5VT97 1194 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 GDF6Q6KF10 455 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 MZT2AQ6P582 158 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 DBX2Q6ZNG2 339 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM35AQ86V20 835 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 WDR63Q8IWG1 891 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 TBC1D21Q8IYX1 336 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM9CQ8IZT9 166 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 IPMKQ8NFU5 416 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 MDM1Q8TC05 714 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 ARL8AQ96BM9 186 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 COG3Q96JB2 828 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 MTMR9Q96QG7 549 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 DPH2Q9BQC3 489 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 MRPL4Q9BYD3 311 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 PARD6BQ9BYG5 372 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 UBE2OQ9C0C9 1292 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 CCDC86Q9H6F5 360 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 HPS4Q9NQG7 708 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 FKBP14Q9NWM8 211 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 NAGPAQ9UK23 515 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 EDARQ9UNE0 448 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM50BQ9Y247 325 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 LTN1O94822 1766 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 PKD1L3Q7Z443 1732 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 NSD2O96028 1365 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 C5P01031 1676 aa5.22□□□□□ -1.57
CCDC88A-209ENST00000456975 CYP2D7A0A087X1C5 515 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 A0A1B0GUA9 196 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 GOLGA6L4A6NEF3 574 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 SOBPA7XYQ1 873 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 RNGTTO60942 597 aaKnown RBP5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 ABLIM3O94929 683 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 GUCA1CO95843 209 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 F2P00734 622 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 CTSBP07858 339 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 ATP6V1E1P36543 226 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 GNL1P36915 607 aaPredicted RBP5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 ETV3P41162 512 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 IARSP41252 1262 aaKnown RBP5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 B2MP61769 119 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 DR1Q01658 176 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 KLHL30Q0D2K2 578 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 SSPNQ14714 243 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 GFOD2Q3B7J2 385 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 FAM173BQ6P4H8 233 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 FIGNL1Q6PIW4 674 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 CEP57Q86XR8 500 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 MFN1Q8IWA4 741 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 PI4K2BQ8TCG2 481 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 ACSF2Q96CM8 615 aaPredicted RBP5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 NRBF2Q96F24 287 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 VPS50Q96JG6 964 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 LRGUKQ96M69 825 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 TTC1Q99614 292 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 C7orf25Q9BPX7 421 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 TEX13BQ9BXU2 312 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 FOXP3Q9BZS1 431 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 PCDH18Q9HCL0 1135 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 OBP2AQ9NY56 170 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 GIMAP2Q9UG22 337 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 ZBTB21Q9ULJ3 1066 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 PHF24Q9UPV7 400 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 ZKSCAN5Q9Y2L8 839 aa5.21□□□□□ -1.57
CCDC88A-209ENST00000456975 KIF20BQ96Q89 1820 aa5.21□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF891A8MT65 544 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms