RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CDK4P11802 303 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 CTSSP25774 331 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 MPLP40238 635 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 IL2P60568 153 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 MPP3Q13368 585 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 PPM1KQ8N3J5 372 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 OR2W6PQ8NHA6 318 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 CAGE1Q8TC20 777 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 ASB10Q8WXI3 467 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 NAF1Q96HR8 494 aaKnown RBP6.9□□□□□ -1.3
LINC01040-201ENST00000425048 PAWRQ96IZ0 340 aaKnown RBP6.9□□□□□ -1.3
LINC01040-201ENST00000425048 ATP11BQ9Y2G3 1177 aa6.9□□□□□ -1.3
LINC01040-201ENST00000425048 DRGXA6NNA5 263 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 KDM1AO60341 852 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 TMEM127O75204 238 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 FKBP9O95302 570 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 FOSP01100 380 aaPredicted RBP6.89□□□□□ -1.31
LINC01040-201ENST00000425048 PLA2G5P39877 138 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 C16orf86Q6ZW13 317 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 FKBP9P1Q75LS8 142 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 HDGFL2Q7Z4V5 671 aaPredicted RBP6.89□□□□□ -1.31
LINC01040-201ENST00000425048 SREK1Q8WXA9 508 aaKnown RBP6.89□□□□□ -1.31
LINC01040-201ENST00000425048 CEP95Q96GE4 821 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 NOC2LQ9Y3T9 749 aaKnown RBP6.89□□□□□ -1.31
LINC01040-201ENST00000425048 CDY2AQ9Y6F7 541 aa6.89□□□□□ -1.31
LINC01040-201ENST00000425048 RPTORQ8N122 1335 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 MARCH11A6NNE9 402 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 ITGAMP11215 1152 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 CRHR1P34998 444 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 PTH2RP49190 550 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 SPDYE7PQ495Y7 208 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 FAM47AQ5JRC9 791 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 MFSD14BQ5SR56 506 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 BROXQ5VW32 411 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 RNPC3Q96LT9 517 aaKnown RBP6.88□□□□□ -1.31
LINC01040-201ENST00000425048 PRDM12Q9H4Q4 367 aa6.88□□□□□ -1.31
LINC01040-201ENST00000425048 MAST3O60307 1309 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 PJA2O43164 708 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 PHF2O75151 1096 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 CDKL5O76039 1030 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 CFIP05156 583 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 FLT3LGP49771 235 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 CHN2P52757 468 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 LGALS4P56470 323 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 CLRN1P58418 232 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 SEPT7Q16181 437 aaKnown RBP6.87□□□□□ -1.31
LINC01040-201ENST00000425048 CCDC144BQ3MJ40 725 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 PITRM1Q5JRX3 1037 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 PRAMEF14Q5SWL7 426 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 ATXN7L2Q5T6C5 722 aaPredicted RBP6.87□□□□□ -1.31
LINC01040-201ENST00000425048 AGAP9Q5VTM2 703 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 RASSF3Q86WH2 238 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 NIM1KQ8IY84 436 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 BOLLQ8N9W6 283 aaKnown RBP6.87□□□□□ -1.31
LINC01040-201ENST00000425048 FAM98AQ8NCA5 519 aaKnown RBP6.87□□□□□ -1.31
LINC01040-201ENST00000425048 ZNF480Q8WV37 535 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 APPBP2Q92624 585 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 PHACTR3Q96KR7 559 aa6.87□□□□□ -1.31
LINC01040-201ENST00000425048 ADCYAP1R1P41586 468 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 RHOT2Q8IXI1 618 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 DHX37Q8IY37 1157 aaKnown RBP6.86□□□□□ -1.31
LINC01040-201ENST00000425048 SLC35B2Q8TB61 432 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 NEU1Q99519 415 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 LRFN3Q9BTN0 628 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 SPATA5L1Q9BVQ7 753 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 TARS2Q9BW92 718 aaKnown RBP6.86□□□□□ -1.31
LINC01040-201ENST00000425048 KCTD10Q9H3F6 313 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 TESQ9UGI8 421 aaKnown RBP6.86□□□□□ -1.31
LINC01040-201ENST00000425048 TLK1Q9UKI8 766 aa6.86□□□□□ -1.31
LINC01040-201ENST00000425048 INO80B-WBP1J3KQ70 363 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 C1RP00736 705 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 LPLP06858 475 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 CANXP27824 592 aaKnown RBP6.85□□□□□ -1.31
LINC01040-201ENST00000425048 PTPN7P35236 360 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 CT83Q5H943 113 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 TSHZ3Q63HK5 1081 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 MAPKAPK5Q8IW41 473 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 TMEM132CQ8N3T6 1108 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 SLC44A3Q8N4M1 653 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 SLC5A5Q92911 643 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 INO80BQ9C086 356 aaPredicted RBP6.85□□□□□ -1.31
LINC01040-201ENST00000425048 ALG13Q9NP73 1137 aaKnown RBP6.85□□□□□ -1.31
LINC01040-201ENST00000425048 EMC7Q9NPA0 242 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 NOX1Q9Y5S8 564 aa6.85□□□□□ -1.31
LINC01040-201ENST00000425048 SNRPA1P09661 255 aaKnown RBP6.84□□□□□ -1.31
LINC01040-201ENST00000425048 TKFCQ3LXA3 575 aa6.84□□□□□ -1.31
LINC01040-201ENST00000425048 OR56A1Q8NGH5 318 aa6.84□□□□□ -1.31
LINC01040-201ENST00000425048 DUSP26Q9BV47 211 aa6.84□□□□□ -1.31
LINC01040-201ENST00000425048 REXO4Q9GZR2 422 aaKnown RBP6.84□□□□□ -1.31
LINC01040-201ENST00000425048 KLHL11Q9NVR0 708 aa6.84□□□□□ -1.31
LINC01040-201ENST00000425048 FANCLQ9NW38 375 aa6.84□□□□□ -1.31
LINC01040-201ENST00000425048 POLR2AP24928 1970 aaKnown RBP6.84□□□□□ -1.32
LINC01040-201ENST00000425048 SALL3Q9BXA9 1300 aa6.83□□□□□ -1.32
LINC01040-201ENST00000425048 CXorf49A8MYA2 514 aaPredicted RBP6.83□□□□□ -1.32
LINC01040-201ENST00000425048 FDXRP22570 491 aa6.83□□□□□ -1.32
LINC01040-201ENST00000425048 UGT8Q16880 541 aa6.83□□□□□ -1.32
LINC01040-201ENST00000425048 GPR149Q86SP6 731 aa6.83□□□□□ -1.32
LINC01040-201ENST00000425048 Q96MF0 132 aa6.83□□□□□ -1.32
LINC01040-201ENST00000425048 ALOXE3Q9BYJ1 711 aa6.83□□□□□ -1.32
LINC01040-201ENST00000425048 ELANEP08246 267 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms