RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 RPA1P27694 616 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 PRPF4BQ13523 1007 aaKnown RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 GNL2Q13823 731 aaKnown RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 HSP90AA2PQ14568 343 aaPredicted RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 USP41Q3LFD5 358 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 PPP4R3CPQ6ZMV5 832 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 C15orf39Q6ZRI6 1047 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 C4orf32Q8N8J7 132 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 DEPTORQ8TB45 409 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 CCDC113Q9H0I3 377 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 SSX2IPQ9Y2D8 614 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 ZDBF2Q9HCK1 2354 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 CLUHO75153 1309 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 N4BP3O15049 544 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 ADAM12O43184 909 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 GALR2O43603 387 aaPredicted RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 CFHP08603 1231 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 NTHL1P78549 312 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 TUSC3Q13454 348 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 TDGQ13569 410 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 MAPK6Q16659 721 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 GLRA4Q5JXX5 417 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 NT5DC1Q5TFE4 455 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 CWF19L1Q69YN2 538 aaKnown RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 ASTLQ6HA08 431 aaPredicted RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 GET4Q7L5D6 327 aaPredicted RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 FAM184AQ8NB25 1140 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 CMASQ8NFW8 434 aaPredicted RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 FBXO18Q8NFZ0 1043 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 ERMNQ8TAM6 284 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 KIF2CQ99661 725 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 PRRX2Q99811 253 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 NT5C3AQ9H0P0 336 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 BHMT2Q9H2M3 363 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 FOXP1Q9H334 677 aaPredicted RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 PIDD1Q9HB75 910 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 WDR6Q9NNW5 1121 aaKnown RBP12.78□□□□□ -0.36
USP4-204ENST00000416417 FBXL21Q9UKT6 434 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 KIAA1024Q9UPX6 916 aa12.78□□□□□ -0.36
USP4-204ENST00000416417 NPR3P17342 541 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 CDC25AP30304 524 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 TOB1P50616 345 aaPredicted RBP12.77□□□□□ -0.37
USP4-204ENST00000416417 NAB2Q15742 525 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 FAM187BQ17R55 369 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 FAM171A1Q5VUB5 890 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 LILRA6Q6PI73 481 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 SIX5Q8N196 739 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 PRIMPOLQ96LW4 560 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 CLSTN3Q9BQT9 956 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 C2orf40Q9H1Z8 148 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 GOLGA2P5Q9HBQ8 144 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 DDX19AQ9NUU7 478 aaKnown RBP12.77□□□□□ -0.37
USP4-204ENST00000416417 LRWD1Q9UFC0 647 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 PCDHB6Q9Y5E3 794 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 PIEZO1Q92508 2521 aa12.77□□□□□ -0.37
USP4-204ENST00000416417 USP34Q70CQ2 3546 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 E9PMD0 336 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 I3L4J1 428 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 ACKR2O00590 384 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 THP07101 528 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 NAMPTP43490 491 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 RBM25P49756 843 aaKnown RBP12.76□□□□□ -0.37
USP4-204ENST00000416417 OSTNP61366 133 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 IL17AQ16552 155 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 CEP120Q8N960 986 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 SNX29Q8TEQ0 813 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 LLPHQ9BRT6 129 aaKnown RBP12.76□□□□□ -0.37
USP4-204ENST00000416417 FNIP2Q9P278 1114 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 CA14Q9ULX7 337 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 DUSP12Q9UNI6 340 aa12.76□□□□□ -0.37
USP4-204ENST00000416417 SF3B1O75533 1304 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP4-204ENST00000416417 CCDC169A6NNP5 214 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 STK25O00506 426 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 GFRA3O60609 400 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 FXR2P51116 673 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP4-204ENST00000416417 PTGDRQ13258 359 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 PSMD5Q16401 504 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 ATF7IP2Q5U623 682 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 KCNK18Q7Z418 384 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 GRASPQ7Z6J2 395 aaPredicted RBP12.75□□□□□ -0.37
USP4-204ENST00000416417 SLC44A3Q8N4M1 653 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 LNX1Q8TBB1 728 aaPredicted RBP12.75□□□□□ -0.37
USP4-204ENST00000416417 IFT74Q96LB3 600 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 ADPGKQ9BRR6 497 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 TTPALQ9BTX7 342 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 PRKD2Q9BZL6 878 aa12.75□□□□□ -0.37
USP4-204ENST00000416417 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP4-204ENST00000416417 NOL7Q9UMY1 257 aaKnown RBP12.75□□□□□ -0.37
USP4-204ENST00000416417 KRBA1A5PL33 1030 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 CCL16O15467 120 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 ZMYND10O75800 440 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 CLCNKBP51801 687 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 PEX3P56589 373 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 ZRSR1Q15695 479 aaKnown RBP12.74□□□□□ -0.37
USP4-204ENST00000416417 HAUS3Q68CZ6 603 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 RSPO2Q6UXX9 243 aaPredicted RBP12.74□□□□□ -0.37
USP4-204ENST00000416417 ASCL5Q7RTU5 278 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 TMEM130Q8N3G9 435 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 ZSCAN31Q96LW9 406 aaPredicted RBP12.74□□□□□ -0.37
USP4-204ENST00000416417 PLIN2Q99541 437 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms