RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 REEP2Q9BRK0 252 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 HERC2P3Q9BVR0 1158 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 GPR62Q9BZJ7 368 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 CCSER1Q9C0I3 900 aa20.96■□□□□ 0.95
SF3A1-202ENST00000411423 SRPRBQ9Y5M8 271 aaKnown RBP20.96■□□□□ 0.95
SF3A1-202ENST00000411423 NCOR1O75376 2440 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 CARNS1A5YM72 827 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 SOD2P04179 222 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 MAPTP10636 758 aaKnown RBP20.95■□□□□ 0.94
SF3A1-202ENST00000411423 DCAF4L1Q3SXM0 396 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 GPBP1Q86WP2 473 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 CALML4Q96GE6 196 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 B3GALT6Q96L58 329 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 KLHL5Q96PQ7 755 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 ADPGKQ9BRR6 497 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 HAPLN2Q9GZV7 340 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 C17orf75Q9HAS0 396 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 PRKAG3Q9UGI9 489 aa20.95■□□□□ 0.94
SF3A1-202ENST00000411423 MYH15Q9Y2K3 1946 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 MYH11P35749 1972 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 CASTOR2A6NHX0 329 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 CNPP09543 421 aaKnown RBP20.94■□□□□ 0.94
SF3A1-202ENST00000411423 SSTR3P32745 418 aaPredicted RBP20.94■□□□□ 0.94
SF3A1-202ENST00000411423 GIT2Q14161 759 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 GLRA4Q5JXX5 417 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 FOXD4L5Q5VV16 416 aaPredicted RBP20.94■□□□□ 0.94
SF3A1-202ENST00000411423 ZBTB33Q86T24 672 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 C12orf76Q8N812 135 aaPredicted RBP20.94■□□□□ 0.94
SF3A1-202ENST00000411423 FOXD4L4Q8WXT5 416 aaPredicted RBP20.94■□□□□ 0.94
SF3A1-202ENST00000411423 RPS6KC1Q96S38 1066 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 FIZ1Q96SL8 496 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 MRPL4Q9BYD3 311 aaKnown RBP20.94■□□□□ 0.94
SF3A1-202ENST00000411423 KCND2Q9NZV8 630 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 FAM50BQ9Y247 325 aa20.94■□□□□ 0.94
SF3A1-202ENST00000411423 RBM19Q9Y4C8 960 aaKnown RBP20.94■□□□□ 0.94
SF3A1-202ENST00000411423 A0A087X0B3 334 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 C2CD2LO14523 706 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 NCKAP1LP55160 1127 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 OSTNP61366 133 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 TUSC3Q13454 348 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 ZNF568Q3ZCX4 644 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 KIAA0319Q5VV43 1072 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 HASPINQ8TF76 798 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 CASP10Q92851 521 aa20.93■□□□□ 0.94
SF3A1-202ENST00000411423 FSD2A1L4K1 749 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 KIF4AO95239 1232 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 GRM5P41594 1212 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 NASPP49321 788 aaPredicted RBP20.92■□□□□ 0.94
SF3A1-202ENST00000411423 ZNF131P52739 623 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 PKP1Q13835 747 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 SLC39A14Q15043 492 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 SEZ6Q53EL9 994 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 FUT10Q6P4F1 479 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 CD300LGQ6UXG3 332 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 HSCBQ8IWL3 235 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 LARP4BQ92615 738 aaKnown RBP20.92■□□□□ 0.94
SF3A1-202ENST00000411423 PPP1R10Q96QC0 940 aaKnown RBP20.92■□□□□ 0.94
SF3A1-202ENST00000411423 COLEC11Q9BWP8 271 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 ZSCAN16Q9H4T2 348 aaPredicted RBP20.92■□□□□ 0.94
SF3A1-202ENST00000411423 C11orf16Q9NQ32 467 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 CHST7Q9NS84 486 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 ADAM28Q9UKQ2 775 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 TRIP11Q15643 1979 aa20.92■□□□□ 0.94
SF3A1-202ENST00000411423 PI4K2BG5E9Z4 385 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 BRD1O95696 1058 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 THP07101 528 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 WEE2P0C1S8 567 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 CLCN4P51793 760 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 PLXNA3P51805 1871 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 SOX4Q06945 474 aaPredicted RBP20.91■□□□□ 0.94
SF3A1-202ENST00000411423 HSP90AA2PQ14568 343 aaPredicted RBP20.91■□□□□ 0.94
SF3A1-202ENST00000411423 XKR4Q5GH76 650 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 MPZL3Q6UWV2 235 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 ALKAL1Q6UXT8 129 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 TMEM130Q8N3G9 435 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 SPRYD3Q8NCJ5 442 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 ZMAT2Q96NC0 199 aaKnown RBP20.91■□□□□ 0.94
SF3A1-202ENST00000411423 GOLGA2P5Q9HBQ8 144 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 MRPL17Q9NRX2 175 aaKnown RBP20.91■□□□□ 0.94
SF3A1-202ENST00000411423 TFIP11Q9UBB9 837 aaKnown RBP20.91■□□□□ 0.94
SF3A1-202ENST00000411423 ODF2LQ9ULJ1 636 aa20.91■□□□□ 0.94
SF3A1-202ENST00000411423 MORC2Q9Y6X9 1032 aaPredicted RBP20.91■□□□□ 0.94
SF3A1-202ENST00000411423 LOC730098B7Z3J9 87 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 TEX28O15482 410 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 HARSP12081 509 aaKnown RBP20.9■□□□□ 0.94
SF3A1-202ENST00000411423 DDIT3P35638 169 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 GLUD2P49448 558 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 DSG1Q02413 1049 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 LINC00301Q8NCQ3 95 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 RASSF8Q8NHQ8 419 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 RXFP1Q9HBX9 757 aa20.9■□□□□ 0.94
SF3A1-202ENST00000411423 SMIM28A0A1B0GU29 152 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 URODP06132 367 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 SRGAP2BP0DMP2 458 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 MCF2P10911 925 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 HOXB8P17481 243 aaPredicted RBP20.89■□□□□ 0.93
SF3A1-202ENST00000411423 BMS1Q14692 1282 aaKnown RBP20.89■□□□□ 0.93
SF3A1-202ENST00000411423 RTP2Q5QGT7 225 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 RARS2Q5T160 578 aaKnown RBP20.89■□□□□ 0.93
SF3A1-202ENST00000411423 HAUS6Q7Z4H7 955 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms