RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MSRAQ9UJ68 235 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 DDX60Q8IY21 1712 aaKnown RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 ANKRD18BA2A2Z9 1011 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 GRM8O00222 908 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 MPOP05164 745 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 VIPR1P32241 457 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 GPR3P46089 330 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 OCRLQ01968 901 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 IFIT5Q13325 482 aaKnown RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 KLF1Q13351 362 aaPredicted RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 RTP5Q14D33 572 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 CCDC57Q2TAC2 916 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 ZBTB41Q5SVQ8 909 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 OLFM4Q6UX06 510 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 LIPIQ6XZB0 460 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 PNMA8AQ86V59 439 aaPredicted RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 CILP2Q8IUL8 1156 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 ZNF610Q8N9Z0 462 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 PHOSPHO1Q8TCT1 267 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 LMBR1Q8WVP7 490 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 GBP4Q96PP9 640 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 PLA2G12BQ9BX93 195 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 API5Q9BZZ5 524 aaKnown RBP7.74□□□□□ -1.17
USP40-202ENST00000409945 ZDHHC5Q9C0B5 715 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.74□□□□□ -1.17
USP40-202ENST00000409945 HACL1Q9UJ83 578 aa7.74□□□□□ -1.17
USP40-202ENST00000409945 XDHP47989 1333 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 MPIG6BO95866 241 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 FAHP16930 419 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 AFMP43652 599 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 KCNJ4P48050 445 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 MAPKAPK2P49137 400 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 SESN3P58005 492 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 KIAA2012Q0VF49 1180 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 LRRC32Q14392 662 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 BEND3Q5T5X7 828 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 CD276Q5ZPR3 534 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 TEPPQ6URK8 271 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 ATG4DQ86TL0 474 aaPredicted RBP7.73□□□□□ -1.17
USP40-202ENST00000409945 STK32CQ86UX6 486 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 TTLL11Q8NHH1 800 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 CELF1Q92879 486 aaKnown RBP7.73□□□□□ -1.17
USP40-202ENST00000409945 TSPAN17Q96FV3 270 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 ANKRD2Q9GZV1 360 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 RTL9Q8NET4 1388 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 MYH3P11055 1940 aa7.73□□□□□ -1.17
USP40-202ENST00000409945 MYOCOSA0A1B0GUC4 107 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 FOXP2O15409 715 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 DDNO94850 711 aaPredicted RBP7.72□□□□□ -1.17
USP40-202ENST00000409945 FBXO21O94952 628 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 CCT4P50991 539 aaKnown RBP7.72□□□□□ -1.17
USP40-202ENST00000409945 DBPQ10586 325 aaPredicted RBP7.72□□□□□ -1.17
USP40-202ENST00000409945 MOGSQ13724 837 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 LRSAM1Q6UWE0 723 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 ZNF605Q86T29 641 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 RASSF3Q86WH2 238 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 MIB1Q86YT6 1006 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 C1orf162Q8NEQ5 155 aaPredicted RBP7.72□□□□□ -1.17
USP40-202ENST00000409945 SSH1Q8WYL5 1049 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 FUBP3Q96I24 572 aaKnown RBP eCLIP7.72□□□□□ -1.17
USP40-202ENST00000409945 ANO3Q9BYT9 981 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 DTLQ9NZJ0 730 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 MAFKO60675 156 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 ULK1O75385 1050 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 UFL1O94874 794 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 ASGR2P07307 311 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 AOAHP28039 575 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 SDHAP31040 664 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 YBX1P67809 324 aaKnown RBP7.72□□□□□ -1.17
USP40-202ENST00000409945 MYBPC3Q14896 1274 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 CIAPIN1Q6FI81 312 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 ZSWIM9Q86XI8 627 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 TRMT2AQ8IZ69 625 aaKnown RBP7.72□□□□□ -1.17
USP40-202ENST00000409945 AMNQ9BXJ7 453 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 RHOBTB2Q9BYZ6 727 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 ZFP64Q9NPA5 681 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 PPP2R3BQ9Y5P8 575 aa7.72□□□□□ -1.17
USP40-202ENST00000409945 WDR90Q96KV7 1748 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 OR14I1A6ND48 311 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 C8BP07358 591 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 HSPA6P17066 643 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 PRELPP51888 382 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 ZC3H14Q6PJT7 736 aaKnown RBP7.71□□□□□ -1.18
USP40-202ENST00000409945 SLC2A13Q96QE2 648 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 MENTQ9BUN1 341 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 SGPP1Q9BX95 441 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 GREM2Q9H772 168 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 ACSS2Q9NR19 701 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 AASDHPPTQ9NRN7 309 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 NUDT5Q9UKK9 219 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 NOC2LQ9Y3T9 749 aaKnown RBP7.71□□□□□ -1.18
USP40-202ENST00000409945 ZBED9Q6R2W3 1325 aa7.71□□□□□ -1.18
USP40-202ENST00000409945 SCN4AP35499 1836 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 NFIBO00712 420 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 GLI1P08151 1106 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 RGS3P49796 1198 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 GPSM2P81274 684 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 PIN1Q13526 163 aaPredicted RBP7.7□□□□□ -1.18
USP40-202ENST00000409945 PRAMEF18Q5VWM3 479 aa7.7□□□□□ -1.18
USP40-202ENST00000409945 TMC5Q6UXY8 1006 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms