RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SPAG5Q96R06 1193 aa15.25■□□□□ 0.03
GPNMB-203ENST00000409458 ADAMTS10Q9H324 1103 aa15.25■□□□□ 0.03
GPNMB-203ENST00000409458 SPC25Q9HBM1 224 aa15.25■□□□□ 0.03
GPNMB-203ENST00000409458 PDE11AQ9HCR9 933 aa15.25■□□□□ 0.03
GPNMB-203ENST00000409458 XPNPEP3Q9NQH7 507 aa15.25■□□□□ 0.03
GPNMB-203ENST00000409458 APEX2Q9UBZ4 518 aa15.25■□□□□ 0.03
GPNMB-203ENST00000409458 TNFSF13BQ9Y275 285 aa15.25■□□□□ 0.03
GPNMB-203ENST00000409458 REXO2Q9Y3B8 237 aaKnown RBP15.25■□□□□ 0.03
GPNMB-203ENST00000409458 EPN1Q9Y6I3 576 aaPredicted RBP15.25■□□□□ 0.03
GPNMB-203ENST00000409458 OGTO15294 1046 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 GPR32O75388 356 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 OFD1O75665 1012 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 CLDN10P78369 228 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 HSP90AA2PQ14568 343 aaPredicted RBP15.24■□□□□ 0.03
GPNMB-203ENST00000409458 ASIC2Q16515 512 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 KIZQ2M2Z5 673 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 DNTTIP2Q5QJE6 756 aaKnown RBP15.24■□□□□ 0.03
GPNMB-203ENST00000409458 PHLDB3Q6NSJ2 640 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 CXCL17Q6UXB2 119 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 ARHGEF19Q8IW93 802 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 BRSK2Q8IWQ3 736 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 C7orf31Q8N865 590 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 RAET1EQ8TD07 263 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 ZNF516Q92618 1163 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 SEMA4DQ92854 862 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 ERO1AQ96HE7 468 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 CPB2Q96IY4 423 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 PRIMPOLQ96LW4 560 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 FNBP1Q96RU3 617 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 CDT1Q9H211 546 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 PDZD7Q9H5P4 517 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 AIPL1Q9NZN9 384 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 DNAJC12Q9UKB3 198 aa15.24■□□□□ 0.03
GPNMB-203ENST00000409458 ANK1P16157 1881 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 TSPAN1O60635 241 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 FKTNO75072 461 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 SERPING1P05155 500 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 PNMA6AP0CW24 399 aaPredicted RBP15.23■□□□□ 0.03
GPNMB-203ENST00000409458 TNNT1P13805 278 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 CYLC1P35663 651 aaPredicted RBP15.23■□□□□ 0.03
GPNMB-203ENST00000409458 EIF4A3P38919 411 aaKnown RBP15.23■□□□□ 0.03
GPNMB-203ENST00000409458 PTPN14Q15678 1187 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.23■□□□□ 0.03
GPNMB-203ENST00000409458 C15orf39Q6ZRI6 1047 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 SV2AQ7L0J3 742 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 SRGAP1Q7Z6B7 1085 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 CCDC170Q8IYT3 715 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 TAS1R2Q8TE23 839 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 ZNF296Q8WUU4 475 aaPredicted RBP15.23■□□□□ 0.03
GPNMB-203ENST00000409458 CGRRF1Q99675 332 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 GPR88Q9GZN0 384 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 SAGE1Q9NXZ1 904 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 CPSF3Q9UKF6 684 aaKnown RBP15.23■□□□□ 0.03
GPNMB-203ENST00000409458 MYO6Q9UM54 1294 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 COQ4Q9Y3A0 265 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 FRMPD3Q5JV73 1810 aa15.23■□□□□ 0.03
GPNMB-203ENST00000409458 F8VZ95 297 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 GNRH1P01148 92 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 ARF4P18085 180 aaPredicted RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 FGFR4P22455 802 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 KIF11P52732 1056 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 ARID5AQ03989 594 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 MAPK8IP2Q13387 824 aaPredicted RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 TDRD12Q587J7 1177 aaKnown RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 CEP120Q8N960 986 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 KLHDC9Q8NEP7 349 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 PXYLP1Q8TE99 480 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 DNAJB3Q8WWF6 145 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 CCDC42Q96M95 316 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 OSMRQ99650 979 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 CDHR5Q9HBB8 845 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 GINS2Q9Y248 185 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 DAAM1Q9Y4D1 1078 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 GOLGA6L9A6NEM1 432 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 EIF3CLB5ME19 914 aaKnown RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 ERLIN2O94905 339 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 TNNI1P19237 187 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 RFX1P22670 979 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 DRAP1Q14919 205 aaPredicted RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 ASTE1Q2TB18 679 aaPredicted RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 NBPF20Q3BBV1 942 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 ZACNQ401N2 412 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 SLC9C1Q4G0N8 1177 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 TDRD10Q5VZ19 366 aaKnown RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 THNSL1Q8IYQ7 743 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 FBXL13Q8NEE6 735 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 EIF3CQ99613 913 aaKnown RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 STK33Q9BYT3 514 aa15.22■□□□□ 0.03
GPNMB-203ENST00000409458 GCOM2Q9BZD3 368 aaPredicted RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 DDX20Q9UHI6 824 aaKnown RBP15.22■□□□□ 0.03
GPNMB-203ENST00000409458 SSU72P8A0A1W2PR75 194 aa15.21■□□□□ 0.03
GPNMB-203ENST00000409458 ZNF263O14978 683 aa15.21■□□□□ 0.03
GPNMB-203ENST00000409458 C4BPAP04003 597 aaKnown RBP15.21■□□□□ 0.03
GPNMB-203ENST00000409458 MYCNP04198 464 aaPredicted RBP15.21■□□□□ 0.03
GPNMB-203ENST00000409458 ASGR1P07306 291 aa15.21■□□□□ 0.03
GPNMB-203ENST00000409458 GNAT1P11488 350 aa15.21■□□□□ 0.03
GPNMB-203ENST00000409458 CST5P28325 142 aaPredicted RBP15.21■□□□□ 0.03
GPNMB-203ENST00000409458 OSTNP61366 133 aa15.21■□□□□ 0.03
GPNMB-203ENST00000409458 KLHL30Q0D2K2 578 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms