RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TYK2P29597 1187 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 RFC5P40937 340 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CSTF3Q12996 717 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ITGA9Q13797 1035 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 DUOXA2Q1HG44 320 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 LINC00523Q86TU6 105 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ARHGEF26Q96DR7 871 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 PRPF18Q99633 342 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MMTAG2Q9BU76 263 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 PLA2G12BQ9BX93 195 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 GTSE1Q9NYZ3 720 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 SLC9A2Q9UBY0 812 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 UTYO14607 1347 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 FAM95CA0A1B0GW59 222 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MAGEA13PA6NCF6 341 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 TRAPPC3O43617 180 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 SRP72O76094 671 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ACTR2P61160 394 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 PTK6Q13882 451 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 HP1BP3Q5SSJ5 553 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 RASSF3Q86WH2 238 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 RYBPQ8N488 228 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 OSBP2Q969R2 916 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 AGPAT1Q99943 283 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MRPS26Q9BYN8 205 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 BHMT2Q9H2M3 363 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 SELENONQ9NZV5 590 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ATP11BQ9Y2G3 1177 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ABCA8O94911 1581 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 RHOBTB3O94955 611 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CRKLP46109 303 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 PRAMEP78395 509 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 SFSWAPQ12872 951 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MYBPC2Q14324 1141 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CNGA3Q16281 694 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 SBK1Q52WX2 424 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 FIGNQ5HY92 759 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 EIF1ADQ8N9N8 165 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 PHF21AQ96BD5 680 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF341Q9BYN7 854 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ISCUQ9H1K1 167 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 RSAD1Q9HA92 442 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 NGRNQ9NPE2 291 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 KIAA1257Q9ULG3 409 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 FAM32AQ9Y421 112 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 FLT1P17948 1338 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 hCG_1642624A0A1W2PR95 340 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 E5RI56 91 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ABL1P00519 1130 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 DNAJB2P25686 324 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 TKTP29401 623 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 GNA15P30679 374 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 FDFT1P37268 417 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 SLCO1A2P46721 670 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 PDIA2Q13087 525 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 TP53BP2Q13625 1128 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 KRT33BQ14525 404 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 UGT3A1Q6NUS8 523 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 C4orf50Q6ZRC1 276 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CATSPER4Q7RTX7 472 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 APOBEC3FQ8IUX4 373 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 LRRC43Q8N309 656 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 OR6B3Q8NGW1 331 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 TRABDQ9H4I3 376 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 NXF1Q9UBU9 619 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 TBK1Q9UHD2 729 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ADAM30Q9UKF2 790 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CEP170Q5SW79 1584 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 C3orf70A6NLC5 250 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CLIC2O15247 247 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 ZC3H11AO75152 810 aaKnown RBP eCLIP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CCDC159P0C7I6 412 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MAPK1P28482 360 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 SERPINB3P29508 390 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 VHLP40337 213 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CARSP49589 748 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 RGS4P49798 205 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 STX3Q13277 289 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MTMR1Q13613 665 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MXD4Q14582 209 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 TTLL4Q14679 1199 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CRYMQ14894 314 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 CD302Q8IX05 232 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 NEDD1Q8NHV4 660 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 XPO6Q96QU8 1125 aaKnown RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 AP1M1Q9BXS5 423 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 OSBPL1AQ9BXW6 950 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 VPS11Q9H270 941 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 TUBE1Q9UJT0 475 aa6.43□□□□□ -1.38
SCN1A-203ENST00000409050 KDM6AO15550 1401 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-203ENST00000409050 MAGEB2O15479 319 aa6.42□□□□□ -1.38
SCN1A-203ENST00000409050 SNRPAP09012 282 aaKnown RBP6.42□□□□□ -1.38
SCN1A-203ENST00000409050 HOXB8P17481 243 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-203ENST00000409050 MAP4P27816 1152 aaKnown RBP6.42□□□□□ -1.38
SCN1A-203ENST00000409050 STIP1P31948 543 aaKnown RBP6.42□□□□□ -1.38
SCN1A-203ENST00000409050 DRAP1Q14919 205 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-203ENST00000409050 NAB2Q15742 525 aa6.42□□□□□ -1.38
SCN1A-203ENST00000409050 MTERF2Q49AM1 385 aa6.42□□□□□ -1.38
SCN1A-203ENST00000409050 LUZP2Q86TE4 346 aa6.42□□□□□ -1.38
SCN1A-203ENST00000409050 LCORLQ8N3X6 602 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms