RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FBXO10Q9UK96 956 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 ACAD8Q9UKU7 415 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 PCDHA9Q9Y5H5 950 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 ASXL2Q76L83 1435 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 RRN3P2A6NIE6 340 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 TRAF5O00463 557 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 C6P13671 934 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 GLULP15104 373 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 ATP2A2P16615 1042 aaKnown RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 GRK2P25098 689 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 ADD2P35612 726 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 GRK3P35626 688 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 PRIM2P49643 509 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 DDB1Q16531 1140 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 KIAA0753Q2KHM9 967 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 GALNT5Q7Z7M9 940 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 CMIPQ8IY22 773 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 KRT78Q8N1N4 520 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 RPGRQ92834 1020 aaKnown RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 SLC5A5Q92911 643 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 HPS3Q969F9 1004 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 GTPBP4Q9BZE4 634 aaKnown RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 TMEM60Q9H2L4 133 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 BHMT2Q9H2M3 363 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 ADAM29Q9UKF5 820 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 NAP1L2Q9ULW6 460 aaPredicted RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 ZKSCAN5Q9Y2L8 839 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 CRYL1Q9Y2S2 319 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 TTLL3Q9Y4R7 772 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 A0A087WV62 115 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 MUSKO15146 869 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 HSP90AB1P08238 724 aaKnown RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 FAHP16930 419 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 TACR2P21452 398 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 RAD52P43351 418 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 TUSC3Q13454 348 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 ICAM4Q14773 271 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 PAN2Q504Q3 1202 aaKnown RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 STYK1Q6J9G0 422 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 BRINP3Q76B58 766 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 FASTKD5Q7L8L6 764 aaKnown RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 IGSF22Q8N9C0 903 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 DTX3Q8N9I9 347 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 SLC16A11Q8NCK7 471 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 KIAA1191Q96A73 305 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 SEC62Q99442 399 aaKnown RBP4.8□□□□□ -1.64
HMGB1-204ENST00000399489 ALG1Q9BT22 464 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 SEC61A2Q9H9S3 476 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 DMRT3Q9NQL9 472 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 ARHGAP20Q9P2F6 1191 aa4.8□□□□□ -1.64
HMGB1-204ENST00000399489 FAM170AA1A519 330 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 FAM47E-STBD1D6RA91 191 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 AQP7O14520 342 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 AREL1O15033 823 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 TUSC2O75896 110 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 MTA2O94776 668 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 GFPT2O94808 682 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 ABCB4P21439 1286 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 PEX2P28328 305 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 CLK1P49759 484 aaKnown RBP4.79□□□□□ -1.64
HMGB1-204ENST00000399489 KPNA1P52294 538 aaPredicted RBP4.79□□□□□ -1.64
HMGB1-204ENST00000399489 SCAND1P57086 179 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 GPR85P60893 370 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 ROR1Q01973 937 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 LBX2Q6XYB7 198 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 EP400NLQ6ZTU2 488 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 Q6ZUG5 572 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 PDZD4Q76G19 769 aaPredicted RBP4.79□□□□□ -1.64
HMGB1-204ENST00000399489 DPP9Q86TI2 863 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 REXO1L1PQ8IX06 675 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 PPP1R35Q8TAP8 253 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 UHMK1Q8TAS1 419 aaKnown RBP4.79□□□□□ -1.64
HMGB1-204ENST00000399489 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.79□□□□□ -1.64
HMGB1-204ENST00000399489 NUP133Q8WUM0 1156 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 GOLGA1Q92805 767 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 TBC1D20Q96BZ9 403 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 KCNJ15Q99712 375 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 SLC26A6Q9BXS9 759 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 ARHGAP28Q9P2N2 729 aa4.79□□□□□ -1.64
HMGB1-204ENST00000399489 H0Y858 1186 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 H3BML4 177 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 GOLIM4O00461 696 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 GPR42O15529 346 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 ZNF623O75123 536 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 APPP05067 770 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 TNFSF4P23510 183 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 GPR3P46089 330 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 GLRBP48167 497 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 FXR1P51114 621 aaKnown RBP eCLIP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 PFKPQ01813 784 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 GUCY1A3Q02108 690 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 HNRNPA0Q13151 305 aaKnown RBP4.78□□□□□ -1.64
HMGB1-204ENST00000399489 SEPT2Q15019 361 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 ACAP2Q15057 778 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CLUL1Q15846 466 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 GLIPR1L2Q4G1C9 344 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CCDC38Q502W7 563 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 FKBP15Q5T1M5 1219 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 BROXQ5VW32 411 aa4.78□□□□□ -1.64
HMGB1-204ENST00000399489 CREB3L3Q68CJ9 461 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms