RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 ACY1Q03154 408 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 GOLGA8FQ08AF8 430 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 GOLGA8DPQ0D2H9 430 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 MKRN4PQ13434 485 aaPredicted RBP7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 HSP90AA5PQ58FG0 334 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 POTEDQ86YR6 584 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 IGSF22Q8N9C0 903 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 TC2NQ8N9U0 490 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 CDC26Q8NHZ8 85 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 FAM89AQ96GI7 184 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 FERD3LQ96RJ6 166 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 VPS11Q9H270 941 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 DGKBQ9Y6T7 804 aa7.04□□□□□ -1.28
TM9SF4-202ENST00000398022 ARHGAP10A1A4S6 786 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CTAGE9A4FU28 777 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 BTBD18B2RXH4 712 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CACNB4O00305 520 aaPredicted RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 FOXP2O15409 715 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 OR5F1O95221 314 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 DDX5P17844 614 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ITGA6P23229 1130 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 NFKBIAP25963 317 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 RPL9P32969 192 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SPAG1Q07617 926 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 GEN1Q17RS7 908 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CCDC40Q4G0X9 1142 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 EAPPQ56P03 285 aaPredicted RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 HDXQ7Z353 690 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SRGAP1Q7Z6B7 1085 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 MYO3BQ8WXR4 1341 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SGK3Q96BR1 496 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ZNF653Q96CK0 615 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 WDR24Q96S15 920 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 LY9Q9HBG7 655 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 KIAA1586Q9HCI6 787 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 GALNT8Q9NY28 637 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 MTRRQ9UBK8 725 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 TMCO1Q9UM00 188 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SCAF8Q9UPN6 1271 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SRPRBQ9Y5M8 271 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ENC1O14682 589 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SLC7A4O43246 635 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 MAP3K7O43318 606 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 USP2O75604 605 aaPredicted RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ZNF18P17022 549 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 HADHAP40939 763 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 VPS41P49754 854 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 PRKG2Q13237 762 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SLC14A2Q15849 920 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 PCSK7Q16549 785 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ZNF792Q3KQV3 632 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 DALRD3Q5D0E6 543 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 NT5DC1Q5TFE4 455 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 PI16Q6UXB8 463 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 TOGARAM2Q6ZUX3 1019 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 APLFQ8IW19 511 aaPredicted RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 TRMT44Q8IYL2 757 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CEP70Q8NHQ1 597 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 IGDCC4Q8TDY8 1250 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 UTP15Q8TED0 518 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 STK32AQ8WU08 396 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ARL5BQ96KC2 179 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 PRPF18Q99633 342 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 TSG101Q99816 390 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CCDC106Q9BWC9 280 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 TMOD3Q9NYL9 352 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CDC23Q9UJX2 597 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 SH3GLB1Q9Y371 365 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 COL4A1P02462 1669 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 PSMD14O00487 310 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 E2F3O00716 465 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 HDAC3O15379 428 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 RANBP6O60518 1105 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 DAB1O75553 588 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CSF1RP07333 972 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 EEF2P13639 858 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 EZRP15311 586 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CAPN3P20807 821 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ZBTB16Q05516 673 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 NTRK3Q16288 839 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 LONRF2Q1L5Z9 754 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 TKFCQ3LXA3 575 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 NDUFAF5Q5TEU4 345 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CNSTQ6PJW8 725 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 ARRDC4Q8NCT1 418 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 RIOK1Q9BRS2 568 aaKnown RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 MYL10Q9BUA6 226 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 WNT5BQ9H1J7 359 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 MMRN2Q9H8L6 949 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 PARVBQ9HBI1 364 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CYP4F12Q9HCS2 524 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 LZTFL1Q9NQ48 299 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 TTC7AQ9ULT0 858 aaPredicted RBP7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 NUP98P52948 1817 aa7.03□□□□□ -1.28
TM9SF4-202ENST00000398022 CDHR2Q9BYE9 1310 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 A0A1B0GTH6 734 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 KLRG2A4D1S0 409 aaPredicted RBP7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 CTAGE15A4D2H0 777 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 SPDYE16A6NNV3 312 aaPredicted RBP7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 GOLGA8MH3BSY2 632 aa7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms