RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 FAM102BQ5T8I3 360 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 SLC13A5Q86YT5 568 aaPredicted RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 AKT1S1Q96B36 256 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 ZNF317Q96PQ6 595 aaPredicted RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 ZNF70Q9UC06 446 aaPredicted RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 PCYOX1Q9UHG3 505 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 CCT8L1PA6NM43 557 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 CCDC169A6NNP5 214 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 RFX1P22670 979 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 COILP38432 576 aaPredicted RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 SIX1Q15475 284 aaPredicted RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 OTUD6AQ7L8S5 288 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 ATXN2LQ8WWM7 1075 aaKnown RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 PRMT1Q99873 361 aaKnown RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 PI4K2AQ9BTU6 479 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 ZNF536O15090 1300 aa22.12■■□□□ 1.13
CLK3-202ENST00000395066 MGRN1O60291 552 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 MUTP22033 750 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 TRIP13Q15645 432 aaPredicted RBP22.11■■□□□ 1.13
CLK3-202ENST00000395066 PPP2R5EQ16537 467 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 TKFCQ3LXA3 575 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 ATG4AQ8WYN0 398 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 N4BP2L2Q92802 583 aaPredicted RBP22.11■■□□□ 1.13
CLK3-202ENST00000395066 DONSONQ9NYP3 566 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 CNTNAP1P78357 1384 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 ATP9AO75110 1047 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 ALAS1P13196 640 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 EZRP15311 586 aaKnown RBP22.11■■□□□ 1.13
CLK3-202ENST00000395066 QARSP47897 775 aaKnown RBP22.11■■□□□ 1.13
CLK3-202ENST00000395066 SNRNP35Q16560 246 aaKnown RBP22.11■■□□□ 1.13
CLK3-202ENST00000395066 FMNL3Q8IVF7 1028 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 ANKS4BQ8N8V4 417 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 TAS1R2Q8TE23 839 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 AGO4Q9HCK5 861 aaKnown RBP22.11■■□□□ 1.13
CLK3-202ENST00000395066 PFASO15067 1338 aa22.11■■□□□ 1.13
CLK3-202ENST00000395066 RIPK2O43353 540 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 CYP11B1P15538 503 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 CAP2P40123 477 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 MMP13P45452 471 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 LRRC34Q8IZ02 419 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 PGM2Q96G03 612 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 ZNFX1Q9P2E3 1918 aaKnown RBP22.1■■□□□ 1.13
CLK3-202ENST00000395066 ACSL3O95573 720 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 MYCLP12524 364 aaPredicted RBP22.1■■□□□ 1.13
CLK3-202ENST00000395066 SLC8A1P32418 973 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 DRG2P55039 364 aaKnown RBP22.1■■□□□ 1.13
CLK3-202ENST00000395066 TRAF1Q13077 416 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 LONRF1Q17RB8 773 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 RNF207Q6ZRF8 634 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 RPS6KC1Q96S38 1066 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.1■■□□□ 1.13
CLK3-202ENST00000395066 EPB41L3Q9Y2J2 1087 aaPredicted RBP22.1■■□□□ 1.13
CLK3-202ENST00000395066 ASTN2O75129 1339 aaPredicted RBP22.1■■□□□ 1.13
CLK3-202ENST00000395066 CREB1P16220 341 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 MTMR1Q13613 665 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 LRRC14Q15048 493 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 E2F5Q15329 346 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 MGARPQ8TDB4 240 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 PWWP2AQ96N64 755 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 FAM118BQ9BPY3 351 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 HERPUD2Q9BSE4 406 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 RAVER2Q9HCJ3 691 aaKnown RBP22.1■■□□□ 1.13
CLK3-202ENST00000395066 MTRF1LQ9UGC7 380 aaKnown RBP22.1■■□□□ 1.13
CLK3-202ENST00000395066 USP20Q9Y2K6 914 aa22.1■■□□□ 1.13
CLK3-202ENST00000395066 ASAP2O43150 1006 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 HSD17B4P51659 736 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 ELF3P78545 371 aaPredicted RBP22.09■■□□□ 1.13
CLK3-202ENST00000395066 GTF2BQ00403 316 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 MYBPC2Q14324 1141 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 PPP1R7Q15435 360 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 HELQQ8TDG4 1101 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 CLEC4DQ8WXI8 215 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 SHC3Q92529 594 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 WNT8AQ9H1J5 351 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 MLXIPLQ9NP71 852 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 SUFUQ9UMX1 484 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 PODXLO00592 558 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 SSTR3P32745 418 aaPredicted RBP22.09■■□□□ 1.13
CLK3-202ENST00000395066 XKR9Q5GH70 373 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 TAAR1Q96RJ0 339 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 ZNF341Q9BYN7 854 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 INTS9Q9NV88 658 aaKnown RBP22.09■■□□□ 1.13
CLK3-202ENST00000395066 GGT7Q9UJ14 662 aa22.09■■□□□ 1.13
CLK3-202ENST00000395066 BRWD3Q6RI45 1802 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 KRT5P13647 590 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 CHKAP35790 457 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 VPS41P49754 854 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 DLGAP5Q15398 846 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 LMBRD2Q68DH5 695 aaPredicted RBP22.08■■□□□ 1.13
CLK3-202ENST00000395066 FAM151AQ8WW52 585 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 CHST7Q9NS84 486 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.08■■□□□ 1.13
CLK3-202ENST00000395066 CTNNAL1Q9UBT7 734 aa22.08■■□□□ 1.13
CLK3-202ENST00000395066 TP73O15350 636 aa22.08■■□□□ 1.12
CLK3-202ENST00000395066 KIF1CO43896 1103 aaKnown RBP22.08■■□□□ 1.12
CLK3-202ENST00000395066 AUHQ13825 339 aaKnown RBP22.08■■□□□ 1.12
CLK3-202ENST00000395066 ITIH4Q14624 930 aa22.08■■□□□ 1.12
CLK3-202ENST00000395066 HIBCHQ6NVY1 386 aaPredicted RBP22.08■■□□□ 1.12
CLK3-202ENST00000395066 PIGWQ7Z7B1 504 aa22.08■■□□□ 1.12
CLK3-202ENST00000395066 ELAC2Q9BQ52 826 aaKnown RBP22.08■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms