RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ATP11BQ9Y2G3 1177 aa0.28□□□□□ -2.36
RNU6-540P-201ENST00000384622 LINC00473A8K010 186 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 SMIM22K7EJ46 135 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 MPPED1O15442 326 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 ELANEP08246 267 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 NHLRC4P0CG21 123 aaPredicted RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZNF883P0CG24 379 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 EIF4BP23588 611 aaKnown RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 MGAT1P26572 445 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 KIR2DL3P43628 341 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 CRIP2P52943 208 aaPredicted RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 SRPK2P78362 688 aaKnown RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 CLCQ05315 142 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 SPIRE1Q08AE8 756 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 DSC3Q14574 896 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 XKR4Q5GH76 650 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 C10orf25Q5T742 122 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 B3GNTL1Q67FW5 361 aaPredicted RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 SPINK14Q6IE38 97 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 PROSER2Q86WR7 435 aaPredicted RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 LMO3Q8TAP4 145 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 C5orf34Q96MH7 638 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 MMS19Q96T76 1030 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 AMNQ9BXJ7 453 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 MOV10L1Q9BXT6 1211 aaKnown RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 KLHL25Q9H0H3 589 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 CDIP1Q9H305 208 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 RMI1Q9H9A7 625 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 TMEM74BQ9NUR3 256 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 RIC8BQ9NVN3 520 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 UCKL1Q9NWZ5 548 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 SEMA5BQ9P283 1151 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 PCDHB6Q9Y5E3 794 aa0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 ANKRD17O75179 2603 aaKnown RBP0.27□□□□□ -2.37
RNU6-540P-201ENST00000384622 MYO1FO00160 1098 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 SCAMP3O14828 347 aaKnown RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 NKRFO15226 690 aaKnown RBP eCLIP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 DAPK3O43293 454 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 CFBP00751 764 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 PIM1P11309 404 aaPredicted RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 GNAT1P11488 350 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 PTPN1P18031 435 aaKnown RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 AOAHP28039 575 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 ME1P48163 572 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 NBPF8Q3BBV2 869 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 FAM76BQ5HYJ3 339 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 ABLIM2Q6H8Q1 611 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 NADSYN1Q6IA69 706 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 DRICH1Q6PGQ1 229 aaPredicted RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 BTNL9Q6UXG8 535 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 DNAJC14Q6Y2X3 702 aaPredicted RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 DAAM2Q86T65 1068 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 FAM43AQ8N2R8 423 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 NEUROG1Q92886 237 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 FBXL20Q96IG2 436 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 BOD1Q96IK1 185 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 NTPCRQ9BSD7 190 aaKnown RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 NOC4LQ9BVI4 516 aaKnown RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 SENP6Q9GZR1 1112 aaPredicted RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 C14orf93Q9H972 538 aaKnown RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZNF556Q9HAH1 456 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 CLIP2Q9UDT6 1046 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZNF214Q9UL59 606 aaPredicted RBP0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 WDR17Q8IZU2 1322 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 ROBO2Q9HCK4 1378 aa0.26□□□□□ -2.37
RNU6-540P-201ENST00000384622 KAT6AQ92794 2004 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 PAPSS2O95340 614 aaPredicted RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 EPHX1P07099 455 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 ATP5F1P24539 256 aaPredicted RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 GBP2P32456 591 aaPredicted RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 MCM4P33991 863 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 ENTPD1P49961 510 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 HLCSP50747 726 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 FXR1P51114 621 aaKnown RBP eCLIP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 DSCR10P59022 87 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 CXADRP78310 365 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZNF239Q16600 458 aaKnown RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 EFCAB12Q6NXP0 572 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 POMZP3Q6PJE2 187 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 ARHGAP30Q7Z6I6 1101 aaPredicted RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 CRACR2BQ8N4Y2 399 aaPredicted RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 OR5M3Q8NGP4 307 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 SSH3Q8TE77 659 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 CUL5Q93034 780 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 ZC3H10Q96K80 434 aaKnown RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 EGFL8Q99944 293 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 CD244Q9BZW8 370 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 ARHGAP39Q9C0H5 1083 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 SH3BP4Q9P0V3 963 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 BTBD7Q9P203 1132 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 USP36Q9P275 1121 aaKnown RBP0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 KLHL13Q9P2N7 655 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 KCNG2Q9UJ96 466 aa0.25□□□□□ -2.37
RNU6-540P-201ENST00000384622 TTC28Q96AY4 2481 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 SPRR5A0A1B0GTR4 108 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 FAM90A27PA6NNH2 459 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 MINDY4BA8MYZ0 360 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 ADAMTS3O15072 1205 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 TULP3O75386 442 aa0.24□□□□□ -2.37
RNU6-540P-201ENST00000384622 JTBO76095 146 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms