RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 STXBP4Q6ZWJ1 553 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 WRNIP1Q96S55 665 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 NAP1L3Q99457 506 aaPredicted RBP17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 ELAC2Q9BQ52 826 aaKnown RBP17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 DDX23Q9BUQ8 820 aaKnown RBP17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 DNAJC17Q9NVM6 304 aaKnown RBP17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 FAM187AA6NFU0 413 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 CREB1P16220 341 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 ZNF131P52739 623 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 MGARPQ8TDB4 240 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 SAAL1Q96ER3 474 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 SGSM3Q96HU1 749 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 MLXIPLQ9NP71 852 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 CD2APQ9Y5K6 639 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 ZBED4O75132 1171 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 P4HBP07237 508 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 CCDC197Q8NCU1 140 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 INTS9Q9NV88 658 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 SYNGAP1Q96PV0 1343 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 VIMP08670 466 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 PEX5P50542 639 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 SNCBQ16143 134 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 FAM133BQ5BKY9 247 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 NOP9Q86U38 636 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 SLC47A2Q86VL8 602 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 PGM2Q96G03 612 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 AGO4Q9HCK5 861 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 RNF146Q9NTX7 359 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 LARSQ9P2J5 1176 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 DIS3Q9Y2L1 958 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 CHRNB2P17787 502 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 QARSP47897 775 aaKnown RBP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 C1orf220Q5T0J3 134 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 RHOT2Q8IXI1 618 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 CCDC105Q8IYK2 499 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 TRPC6Q9Y210 931 aa17.45■□□□□ 0.38
NKX3-1-201ENST00000380871 MYH11P35749 1972 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 WDR46O15213 610 aaKnown RBP17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 YWHABP31946 246 aaKnown RBP17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 RDXP35241 583 aaKnown RBP17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 PPP2R5AQ15172 486 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 LONRF1Q17RB8 773 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 LACTB2Q53H82 288 aaPredicted RBP17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 RASAL2Q9UJF2 1139 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 CCT8L1PA6NM43 557 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 NFKBIEO00221 500 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 CYP26A1O43174 497 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 RIPK2O43353 540 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 TBC1D12O60347 775 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 RARAP10276 462 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 DLATP10515 647 aaKnown RBP17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 CTNNA2P26232 953 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 CHRNA3P32297 505 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 NFIL3Q16649 462 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 MCF2L2Q86YR7 1114 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 UBL4BQ8N7F7 174 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 TEPSINQ96N21 525 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 ABCF3Q9NUQ8 709 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 CTNNAL1Q9UBT7 734 aa17.44■□□□□ 0.38
NKX3-1-201ENST00000380871 ACSL3O95573 720 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 RARRES1P49788 294 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 GPC5P78333 572 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 SNX1Q13596 522 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 ANGEL2Q5VTE6 544 aaKnown RBP17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 SNRNP48Q6IEG0 339 aaKnown RBP17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 HIBCHQ6NVY1 386 aaPredicted RBP17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 HAUS6Q7Z4H7 955 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 RIT2Q99578 217 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 CXorf56Q9H5V9 222 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 DHX15O43143 795 aaKnown RBP17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 CCDC172P0C7W6 258 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 BCRP11274 1271 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 HSD17B4P51659 736 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 TNFAIP1Q13829 316 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 C11orf63Q6NUN7 778 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 EPS8L1Q8TE68 723 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 C1orf54Q8WWF1 131 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 VAMP7P51809 220 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 XRCC4Q13426 336 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 AUHQ13825 339 aaKnown RBP17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 PGM5Q15124 567 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 PPP1R7Q15435 360 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 ARMC9Q7Z3E5 817 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 PHLDB2Q86SQ0 1253 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 CENPTQ96BT3 561 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 SLC38A10Q9HBR0 1119 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 PCYOX1Q9UHG3 505 aa17.43■□□□□ 0.38
NKX3-1-201ENST00000380871 RBBP6Q7Z6E9 1792 aaKnown RBP17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 SPOPO43791 374 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 CCNE2O96020 404 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 MAP2K1Q02750 393 aaPredicted RBP17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 SIX1Q15475 284 aaPredicted RBP17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 TRIP13Q15645 432 aaPredicted RBP17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 TBC1D31Q96DN5 1066 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 PWWP2AQ96N64 755 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 NUP85Q9BW27 656 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 KDM4CQ9H3R0 1056 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 PICK1Q9NRD5 415 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms