RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KIZQ2M2Z5 673 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 P3H1Q32P28 736 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SGO1Q5FBB7 561 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ANKRD40Q6AI12 368 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SCARA5Q6ZMJ2 495 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 RBM43Q6ZSC3 357 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 Q6ZUG5 572 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CCDC103Q8IW40 242 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CCDC197Q8NCU1 140 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TTC8Q8TAM2 541 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SSH1Q8WYL5 1049 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 HEXIM2Q96MH2 286 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 DACT1Q9NYF0 836 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 AMFRQ9UKV5 643 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 C2CD2LO14523 706 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NDUFS2O75306 463 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ITIH2P19823 946 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PBLDP30039 288 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 HMOX2P30519 316 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PTH1RQ03431 593 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CYP24A1Q07973 514 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 GATAD2AQ86YP4 633 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF611Q8N823 705 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 U2AF1L4Q8WU68 220 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NACC1Q96RE7 527 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TBK1Q9UHD2 729 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SLC39A10Q9ULF5 831 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SOS2Q07890 1332 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 RTL9Q8NET4 1388 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MAGEA13PA6NCF6 341 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 AKR1B15C9JRZ8 316 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PDCD5O14737 125 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 HSPA4LO95757 839 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 FAM107AO95990 144 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CHRM1P11229 460 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ALDH1B1P30837 517 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TNFAIP1Q13829 316 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 EXOC3L4Q17RC7 722 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TNNI3KQ59H18 835 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ARMCX2Q7L311 632 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 LYSMD3Q7Z3D4 306 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 XXYLT1Q8NBI6 393 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 AKT1S1Q96B36 256 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NACC2Q96BF6 587 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TINF2Q9BSI4 451 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NCOA5Q9HCD5 579 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MBD2Q9UBB5 411 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TJP2Q9UDY2 1190 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 CARD8Q9Y2G2 431 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ARHGAP5Q13017 1502 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ADGRA2Q96PE1 1338 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SMIM31A0A1B0GVY4 71 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF202O95125 648 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 UQCRFS1P1P0C7P4 283 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 UMPSP11172 480 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MORC3Q14149 939 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 DNAL1Q4LDG9 190 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 RUNDC3AQ59EK9 446 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SPANXN2Q5MJ10 180 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 DCAF15Q66K64 600 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PROSER1Q86XN7 944 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SPATA2LQ8IUW3 424 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 C2orf69Q8N8R5 385 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF555Q8NEP9 628 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 FAM45AQ8TCE6 357 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SGCDQ92629 289 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 BRINP2Q9C0B6 783 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MUC3BQ9H195 1237 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MIR1-1HGQ9H1L0 117 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ZSWIM6Q9HCJ5 1215 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 ATPIF1Q9UII2 106 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 LSM7Q9UK45 103 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 AURKCQ9UQB9 309 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 MAP3K2Q9Y2U5 619 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NSD3Q9BZ95 1437 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NKTRP30414 1462 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 RGSL1A5PLK6 1076 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 STK4Q13043 487 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 RPS6KA1Q15418 735 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SPATA1Q5VX52 437 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 GALNT18Q6P9A2 607 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 TEX19Q8NA77 164 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NSUN7Q8NE18 718 aaKnown RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 NSL1Q96IY1 281 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SH2B1Q9NRF2 756 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.89□□□□□ -1.63
SCN1A-202ENST00000375405 SH3BP1Q9Y3L3 701 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 DMRT2Q9Y5R5 561 aa4.89□□□□□ -1.63
SCN1A-202ENST00000375405 PLEKHH1Q9ULM0 1364 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ASXL3Q9C0F0 2248 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF208O43345 1280 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 PFKFB2O60825 505 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CALB1P05937 261 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 STIP1P31948 543 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 GUCY1A2P33402 732 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 GPC1P35052 558 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 TRIM25Q14258 630 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CWF19L1Q69YN2 538 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 BRAPQ7Z569 592 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CADPS2Q86UW7 1296 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms