RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ATP11BQ9Y2G3 1177 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 SAMM50Q9Y512 469 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 BTNL10A8MVZ5 291 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 H3BRB1 525 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 HIP1RO75146 1068 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 ATG7O95352 703 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 JAM2P57087 298 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 TRIM60Q495X7 471 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 PADI6Q6TGC4 694 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 ABHD15Q6UXT9 468 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 TUT1Q9H6E5 874 aaKnown RBP16.82■□□□□ 0.28
CCDC40-202ENST00000374876 MED4Q9NPJ6 270 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 EHD2Q9NZN4 543 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 NAGPAQ9UK23 515 aa16.82■□□□□ 0.28
CCDC40-202ENST00000374876 ERICH4A6NGS2 130 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 ARVCFO00192 962 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 N4BP1O75113 896 aaKnown RBP16.81■□□□□ 0.28
CCDC40-202ENST00000374876 P4HBP07237 508 aaKnown RBP16.81■□□□□ 0.28
CCDC40-202ENST00000374876 PSEN2P49810 448 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 DNA2P51530 1060 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 GYS2P54840 703 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 RTP1P59025 263 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 MFSD10Q14728 455 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 IFI16Q16666 785 aaKnown RBP16.81■□□□□ 0.28
CCDC40-202ENST00000374876 MEI1Q5TIA1 1274 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 ZNF746Q6NUN9 644 aaPredicted RBP16.81■□□□□ 0.28
CCDC40-202ENST00000374876 SWSAP1Q6NVH7 229 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 FAM71BQ8TC56 605 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 GLG1Q92896 1179 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 HTATIP2Q9BUP3 242 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 ADAM21Q9UKJ8 722 aa16.81■□□□□ 0.28
CCDC40-202ENST00000374876 PQBP1O60828 265 aaKnown RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 F2P00734 622 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 FERP16591 822 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 MARK3P27448 753 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 FMO5P49326 533 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 CDK7P50613 346 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 KRT76Q01546 638 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 FAM47CQ5HY64 1035 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 ALKBH5Q6P6C2 394 aaKnown RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 GJB7Q6PEY0 223 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 TRMT1LQ7Z2T5 733 aaKnown RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 GSPT2Q8IYD1 628 aaKnown RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 HDAC7Q8WUI4 952 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 MS4A14Q96JA4 679 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 RNPEPQ9H4A4 650 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 DMAC2Q9NW81 257 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 TCEAL9Q9UHQ7 104 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 AJAP1Q9UKB5 411 aaPredicted RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 GRID2IPA4D2P6 1211 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 K7ENM7 598 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 BACH1O14867 736 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 MYBL2P10244 700 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 STAT1P42224 750 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 MLLT1Q03111 559 aaPredicted RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 TLE2Q04725 743 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 SNX17Q15036 470 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 PPP2R5AQ15172 486 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 C8orf74Q6P047 294 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 CCDC60Q8IWA6 550 aaPredicted RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 EXOC4Q96A65 974 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 GDAP1L1Q96MZ0 367 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 SELENOOQ9BVL4 669 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 RBM12Q9NTZ6 932 aaKnown RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 LARSQ9P2J5 1176 aaKnown RBP16.8■□□□□ 0.28
CCDC40-202ENST00000374876 HPCAL4Q9UM19 191 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 PCDHA10Q9Y5I2 948 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 SCN10AQ9Y5Y9 1956 aa16.8■□□□□ 0.28
CCDC40-202ENST00000374876 HAS3O00219 553 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 EVI5O60447 810 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 EXOC3O60645 756 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 SUPT20HL2P0C7V6 817 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 NOP2P46087 812 aaKnown RBP16.79■□□□□ 0.28
CCDC40-202ENST00000374876 STAT5BP51692 787 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 MAPK7Q13164 816 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 MIS18BP1Q6P0N0 1132 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 MAEAQ7L5Y9 396 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 DAW1Q8N136 415 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 SLC43A3Q8NBI5 491 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 HINFPQ9BQA5 517 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 AZI2Q9H6S1 392 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 STIM2Q9P246 746 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 DMGDHQ9UI17 866 aaKnown RBP16.79■□□□□ 0.28
CCDC40-202ENST00000374876 FAN1Q9Y2M0 1017 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 ALPK3Q96L96 1907 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 WDR64B1ANS9 1081 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 LGR5O75473 907 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 GFPT2O94808 682 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 AARSP49588 968 aaKnown RBP eCLIP16.79■□□□□ 0.28
CCDC40-202ENST00000374876 SLC7A5Q01650 507 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 GLE1Q53GS7 698 aaKnown RBP16.79■□□□□ 0.28
CCDC40-202ENST00000374876 C1orf53Q5VUE5 145 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 TAF4BQ92750 862 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 CCDC43Q96MW1 224 aaKnown RBP16.79■□□□□ 0.28
CCDC40-202ENST00000374876 KATNAL1Q9BW62 490 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 STRA6Q9BX79 667 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 SMARCAD1Q9H4L7 1026 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 ZNF302Q9NR11 478 aa16.79■□□□□ 0.28
CCDC40-202ENST00000374876 TRMT13Q9NUP7 481 aaKnown RBP16.79■□□□□ 0.28
CCDC40-202ENST00000374876 GABBR1Q9UBS5 961 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms