RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 DIAPH2O60879 1101 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 NMT1P30419 496 aaKnown RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 SLC1A1P43005 524 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 AP3M2P53677 418 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 TAP1Q03518 808 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 TEDDM1Q5T9Z0 273 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 GPD1LQ8N335 351 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 BEST2Q8NFU1 509 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 FAM161BQ96MY7 647 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 MRPL4Q9BYD3 311 aaKnown RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 TUFT1Q9NNX1 390 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 ZNF302Q9NR11 478 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 UVRAGQ9P2Y5 699 aa12.12□□□□□ -0.47
PTPRF-203ENST00000372407 HERC5Q9UII4 1024 aaKnown RBP12.12□□□□□ -0.47
PTPRF-203ENST00000372407 M0QYV0 167 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 ZNF185O15231 689 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 ASAP2O43150 1006 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 UCHL3P15374 230 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 HSPA9P38646 679 aaKnown RBP12.11□□□□□ -0.47
PTPRF-203ENST00000372407 KRT17Q04695 432 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 EDRF1Q3B7T1 1238 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 SBK1Q52WX2 424 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 ABTB1Q969K4 478 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-203ENST00000372407 PARVAQ9NVD7 372 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 RGL1Q9NZL6 768 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 CFAP69A5D8W1 941 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 TYK2P29597 1187 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 CYP2C19P33261 490 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 DRP2Q13474 957 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 SRLQ86TD4 932 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 PARP9Q8IXQ6 854 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 FSD1LQ9BXM9 530 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 SUGT1Q9Y2Z0 365 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 SLC16A3O15427 465 aaKnown RBP12.11□□□□□ -0.47
PTPRF-203ENST00000372407 FAM102AQ5T9C2 384 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-203ENST00000372407 CCT8L2Q96SF2 557 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 GCOM2Q9BZD3 368 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-203ENST00000372407 MTMR4Q9NYA4 1195 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 GTSE1Q9NYZ3 720 aa12.11□□□□□ -0.47
PTPRF-203ENST00000372407 CYP26A1O43174 497 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ARSEP51690 589 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 CDH6P55285 790 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ACTR2P61160 394 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 AP2B1P63010 937 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ROR1Q01973 937 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ZNF543Q08ER8 600 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ARHGEF6Q15052 776 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 HIF1AQ16665 826 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SLC10A5Q5PT55 438 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ANO5Q75V66 913 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 CDKL3Q8IVW4 592 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SH2D3CQ8N5H7 860 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 CDC26Q8NHZ8 85 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 PARD3BQ8TEW8 1205 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ANKRD7Q92527 254 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SLC13A1Q9BZW2 595 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 KLC4Q9NSK0 619 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ARL2BPQ9Y2Y0 163 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 RNF103-CHMP3A0A140T963 221 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 KITP10721 976 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 TMEM259Q4ZIN3 620 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 LRRC31Q6UY01 552 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SYDE1Q6ZW31 735 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SP8Q8IXZ3 490 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SLC10A4Q96EP9 437 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 WWP1Q9H0M0 922 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 EPN3Q9H201 632 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SUCLA2Q9P2R7 463 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 APEX2Q9UBZ4 518 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 L3MBTL1Q9Y468 752 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 KIAA0391O15091 583 aaKnown RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 FDPSP14324 419 aaKnown RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 NFKBIAP25963 317 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 SPATA21Q7Z572 469 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ZNF512BQ96KM6 892 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 CRAMP1Q96RY5 1269 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 WRNIP1Q96S55 665 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 POLR3FQ9H1D9 316 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ECT2Q9H8V3 914 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 NDE1Q9NXR1 346 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ZFXP17010 805 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ELF1P32519 619 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 TWF2Q6IBS0 349 aaKnown RBP12.1□□□□□ -0.47
PTPRF-203ENST00000372407 LDHDQ86WU2 507 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 TTC8Q8TAM2 541 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 KCNV2Q8TDN2 545 aa12.1□□□□□ -0.47
PTPRF-203ENST00000372407 ZBBXA8MT70 800 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 TBX3O15119 743 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ANTXR2P58335 489 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 POU5F1BQ06416 359 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 RABGAP1LQ5R372 815 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 MS4A14Q96JA4 679 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 TIPINQ9BVW5 301 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 DHX35Q9H5Z1 703 aaKnown RBP12.09□□□□□ -0.47
PTPRF-203ENST00000372407 KIF9Q9HAQ2 790 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 SMG5Q9UPR3 1016 aaKnown RBP12.09□□□□□ -0.47
PTPRF-203ENST00000372407 MYMKA6NI61 221 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 PSMD14O00487 310 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 EIF3HO15372 352 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■□□□ 11.7
PTPRF-203ENST00000372407 ECE2O60344 883 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms