RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ZNHIT6Q9NWK9 470 aaKnown RBP20.27■□□□□ 0.83
CLN3-204ENST00000357857 PTPN22Q9Y2R2 807 aa20.27■□□□□ 0.83
CLN3-204ENST00000357857 PCNTO95613 3336 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 ZNF500O60304 480 aaPredicted RBP20.26■□□□□ 0.83
CLN3-204ENST00000357857 DARSP14868 501 aaKnown RBP20.26■□□□□ 0.83
CLN3-204ENST00000357857 ACLYP53396 1101 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 PCBP1Q15365 356 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-204ENST00000357857 SEZ6Q53EL9 994 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 KRT39Q6A163 491 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 PDXDC1Q6P996 788 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 CYP26C1Q6V0L0 522 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 RRAGAQ7L523 313 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 BRSK2Q8IWQ3 736 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 EHBP1Q8NDI1 1231 aa20.26■□□□□ 0.83
CLN3-204ENST00000357857 TSEN34Q9BSV6 310 aaKnown RBP20.26■□□□□ 0.83
CLN3-204ENST00000357857 TOPORSQ9NS56 1045 aaPredicted RBP20.26■□□□□ 0.83
CLN3-204ENST00000357857 MOXD2PA6NHM9 499 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 MCF2P10911 925 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 UCHL3P15374 230 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 FGFR4P22455 802 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 TNFSF9P41273 254 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 CLDN10P78369 228 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 EPC2Q52LR7 807 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 VTI1AQ96AJ9 217 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.25■□□□□ 0.83
CLN3-204ENST00000357857 NUCKS1Q9H1E3 243 aaKnown RBP20.25■□□□□ 0.83
CLN3-204ENST00000357857 PDE11AQ9HCR9 933 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 FBXL5Q9UKA1 691 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 CPSF3Q9UKF6 684 aaKnown RBP20.25■□□□□ 0.83
CLN3-204ENST00000357857 GRIN2DO15399 1336 aa20.25■□□□□ 0.83
CLN3-204ENST00000357857 SOWAHDA6NJG2 315 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 LRRC53A6NM62 1247 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 EIF4BP23588 611 aaKnown RBP20.24■□□□□ 0.83
CLN3-204ENST00000357857 HNRNPH3P31942 346 aaKnown RBP20.24■□□□□ 0.83
CLN3-204ENST00000357857 CRYBB1P53674 252 aaPredicted RBP20.24■□□□□ 0.83
CLN3-204ENST00000357857 WNT7BP56706 349 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 MEA1Q16626 185 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 WDR59Q6PJI9 974 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 CATSPER4Q7RTX7 472 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 THNSL1Q8IYQ7 743 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 LMO3Q8TAP4 145 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 FHOD1Q9Y613 1164 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 TNNI1P19237 187 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 NCBP1Q09161 790 aaKnown RBP20.24■□□□□ 0.83
CLN3-204ENST00000357857 ITGA7Q13683 1181 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 SNX17Q15036 470 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 RSPH3Q86UC2 560 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 SERINC5Q86VE9 423 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 CGRRF1Q99675 332 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 PLAGL2Q9UPG8 496 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 DAAM1Q9Y4D1 1078 aa20.24■□□□□ 0.83
CLN3-204ENST00000357857 A0A1B0GUA9 196 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 RPLP2P05387 115 aaKnown RBP20.23■□□□□ 0.83
CLN3-204ENST00000357857 MRPS6P82932 125 aaKnown RBP20.23■□□□□ 0.83
CLN3-204ENST00000357857 SURF1Q15526 300 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 SV2AQ7L0J3 742 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 ARRDC4Q8NCT1 418 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 GLT1D1Q96MS3 346 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 CHP1Q99653 195 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 ADPGKQ9BRR6 497 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 COQ4Q9Y3A0 265 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 CITO14578 2027 aa20.23■□□□□ 0.83
CLN3-204ENST00000357857 M0QZ92 97 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 CDK17Q00537 523 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 PTPN11Q06124 597 aaPredicted RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 PTGISQ16647 500 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 KYAT1Q16773 422 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 SFMBT2Q5VUG0 894 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 E4F1Q66K89 784 aaPredicted RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 LMBRD2Q68DH5 695 aaPredicted RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 IQCEQ6IPM2 695 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 RAD9BQ6WBX8 426 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 CEP120Q8N960 986 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 ZNF516Q92618 1163 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 SYN2Q92777 582 aaPredicted RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 CELF4Q9BZC1 486 aaKnown RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 UNC93B1Q9H1C4 597 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 RRAGDQ9NQL2 400 aaPredicted RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 APEX2Q9UBZ4 518 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 MYO6Q9UM54 1294 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 OSTNP61366 133 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 MTF1Q14872 753 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 GJB7Q6PEY0 223 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 C15orf39Q6ZRI6 1047 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 APBB1IPQ7Z5R6 666 aaPredicted RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 RPAINQ86UA6 219 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 FBXL13Q8NEE6 735 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 TMEM40Q8WWA1 233 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 SPAG5Q96R06 1193 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 RPF1Q9H9Y2 349 aaKnown RBP20.22■□□□□ 0.83
CLN3-204ENST00000357857 KCND1Q9NSA2 647 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 TRPV2Q9Y5S1 764 aa20.22■□□□□ 0.83
CLN3-204ENST00000357857 PTPRJQ12913 1337 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 HTTP42858 3142 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 C4BPAP04003 597 aaKnown RBP20.21■□□□□ 0.83
CLN3-204ENST00000357857 CLTAP09496 248 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 RFX1P22670 979 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 AXLP30530 894 aa20.21■□□□□ 0.83
CLN3-204ENST00000357857 HOXA11P31270 313 aaPredicted RBP20.21■□□□□ 0.83
CLN3-204ENST00000357857 RAPGEF1Q13905 1077 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms