RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 POSTNQ15063 836 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CFAP100Q494V2 611 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CT47A1Q5JQC4 288 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 FKBP1CQ5VVH2 108 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 CDCP2Q5VXM1 449 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 ZNF772Q68DY9 489 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 PRR23CQ6ZRP0 262 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 RSRC2Q7L4I2 434 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 WFDC8Q8IUA0 241 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 MCATQ8IVS2 390 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 SMYD4Q8IYR2 804 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 CCAR2Q8N163 923 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 TMTC2Q8N394 836 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 AOPEPQ8N6M6 819 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 C2CD4AQ8NCU7 369 aaPredicted RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 TBC1D5Q92609 795 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 FAM46AQ96IP4 442 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 PIGSQ96S52 555 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 SAP30BPQ9UHR5 308 aaKnown RBP2.61□□□□□ -1.99
VPS54-202ENST00000354504 SLC12A7Q9Y666 1083 aa2.61□□□□□ -1.99
VPS54-202ENST00000354504 MYMKA6NI61 221 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PSMD14O00487 310 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CTAGE5O15320 804 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TP73O15350 636 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 POLR2DO15514 142 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 PSMD10O75832 226 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PARNO95453 639 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 TDP2O95551 362 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 H2AFXP16104 143 aaPredicted RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 ECE1P42892 770 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 KLK7P49862 253 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZNF131P52739 623 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CACNB3P54284 484 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 JAM2P57087 298 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PSMC6P62333 389 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 HERVK_113P62684 666 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 RBM10P98175 930 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 CEBPZQ03701 1054 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 STK4Q13043 487 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ORC2Q13416 577 aaPredicted RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 BMT2Q1RMZ1 405 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CAVIN4Q5BKX8 364 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZC3H12BQ5HYM0 836 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 IFIT1BQ5T764 474 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 TOGARAM2Q6ZUX3 1019 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZNF804AQ7Z570 1209 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 BLIDQ8IZY5 108 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TRIML1Q8N9V2 468 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 KLHL23Q8NBE8 558 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CYP2W1Q8TAV3 490 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PPP1R13BQ96KQ4 1090 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 HSD17B14Q9BPX1 270 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TRIM8Q9BZR9 551 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TRIM9Q9C026 710 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 IKZF4Q9H2S9 585 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SEMA6CQ9H3T2 930 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 DBNDD1Q9H9R9 158 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 LRP2BPQ9P2M1 347 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZNF451Q9Y4E5 1061 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TRIOO75962 3097 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TRIM49BA6NDI0 452 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 WNT10BO00744 389 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PAX4O43316 350 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SUSD5O60279 629 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 MED24O75448 989 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SLITRK5O94991 958 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 HSP90AA1P07900 732 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 CCDC192P0DO97 292 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CALM1P0DP23 149 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CALM2P0DP24 149 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CALM3P0DP25 149 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 FCER1AP12319 257 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 AMPD1P23109 780 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 KRT2P35908 639 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 MRPS9P82933 396 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZNF568Q3ZCX4 644 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 SGO2Q562F6 1265 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 C2orf27AQ580R0 203 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ABHD17CQ6PCB6 329 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 MOXD1Q6UVY6 613 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ACAD11Q709F0 780 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 DHX37Q8IY37 1157 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 PLEKHO2Q8TD55 490 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ELMO3Q96BJ8 720 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 EYA3Q99504 573 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CRNKL1Q9BZJ0 848 aaKnown RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 WNT10AQ9GZT5 417 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TNMDQ9H2S6 317 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 RNF41Q9H4P4 317 aaPredicted RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 PCDH12Q9NPG4 1184 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 MCM9Q9NXL9 1143 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 PRR13Q9NZ81 148 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ABCF2Q9UG63 623 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ZNF214Q9UL59 606 aaPredicted RBP2.6□□□□□ -1.99
VPS54-202ENST00000354504 GDAQ9Y2T3 454 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 TNFRSF10CO14798 259 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 COBLO75128 1261 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ENTPD3O75355 529 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 CAVIN2O95810 425 aa2.6□□□□□ -1.99
VPS54-202ENST00000354504 ITGAVP06756 1048 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms