RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TRIQKQ629K1 86 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 WAPLQ7Z5K2 1190 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 FAM227BQ96M60 508 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 STK39Q9UEW8 545 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 IPPQ9Y573 584 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 EMILIN1Q9Y6C2 1016 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 IL6P05231 212 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 RNASE11Q8TAA1 199 aaKnown RBP13.28□□□□□ -0.28
COL6A3-203ENST00000353578 SAMD9LQ8IVG5 1584 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 BCAP31P51572 246 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 P3H1Q32P28 736 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 LRRC74BQ6ZQY2 392 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 MARK2Q7KZI7 788 aaKnown RBP13.28□□□□□ -0.28
COL6A3-203ENST00000353578 LIFRP42702 1097 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 ADAT2Q7Z6V5 191 aaKnown RBP13.28□□□□□ -0.28
COL6A3-203ENST00000353578 STK32AQ8WU08 396 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 CNDP1Q96KN2 507 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 METTL22Q9BUU2 404 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-203ENST00000353578 TTLL1O95922 423 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 FNTAP49354 379 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 WASHC5Q12768 1159 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 RBM46Q8TBY0 533 aaKnown RBP13.28□□□□□ -0.28
COL6A3-203ENST00000353578 XAGE3Q8WTP9 111 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 AURKCQ9UQB9 309 aa13.28□□□□□ -0.28
COL6A3-203ENST00000353578 RESTQ13127 1097 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 CAPN12Q6ZSI9 719 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 FNIP1Q8TF40 1166 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 BORCS5Q969J3 196 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 THTPAQ9BU02 230 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 MYH7BA7E2Y1 1941 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 OATP04181 439 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 KDSRQ06136 332 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 PDPRQ8NCN5 879 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 FAM32AQ9Y421 112 aaKnown RBP13.27□□□□□ -0.28
COL6A3-203ENST00000353578 WDR64B1ANS9 1081 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 FAM173BQ6P4H8 233 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 AP1M1Q9BXS5 423 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 MAP3K15Q6ZN16 1313 aa13.27□□□□□ -0.28
COL6A3-203ENST00000353578 RPL5P46777 297 aaKnown RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 CCDC85AQ96PX6 553 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 NPHS2Q9NP85 383 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 C2CD2Q9Y426 696 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 TMEM120BA0PK00 339 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 TOM1O60784 492 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 ENO1P06733 434 aaKnown RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 DENND6AQ8IWF6 608 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 PIK3C3Q8NEB9 887 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 HERC5Q9UII4 1024 aaKnown RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 RIPK1Q13546 671 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 TXNDC2Q86VQ3 553 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 DISC1Q9NRI5 854 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 CDC42BPBQ9Y5S2 1711 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 GAS2O43903 313 aaKnown RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 TBXAS1P24557 533 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 TKTP29401 623 aaKnown RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 LIG4P49917 911 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 TRIM62Q9BVG3 475 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 DAPK2Q9UIK4 370 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 AP3M1Q9Y2T2 418 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 ABCB11O95342 1321 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 IDH3BO43837 385 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 PIK3R1P27986 724 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 NSUN7Q8NE18 718 aaKnown RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 UHMK1Q8TAS1 419 aaKnown RBP13.27□□□□□ -0.29
COL6A3-203ENST00000353578 ABHD8Q96I13 439 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 KIAA1586Q9HCI6 787 aa13.27□□□□□ -0.29
COL6A3-203ENST00000353578 SRP72O76094 671 aaKnown RBP13.26□□□□□ -0.29
COL6A3-203ENST00000353578 IMPDH2P12268 514 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 CDK17Q00537 523 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 SLC10A5Q5PT55 438 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 PRPF39Q86UA1 669 aaKnown RBP13.26□□□□□ -0.29
COL6A3-203ENST00000353578 PACS2Q86VP3 889 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 TTLL3Q9Y4R7 772 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 PLCH2O75038 1416 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 SLCO1B7G3V0H7 640 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 AP1S2P56377 157 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 KCNB1Q14721 858 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 CCDC126Q96EE4 140 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 TRIM51Q9BSJ1 452 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 PABPC3Q9H361 631 aaKnown RBP13.26□□□□□ -0.29
COL6A3-203ENST00000353578 KRCC1Q9NPI7 259 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-203ENST00000353578 GPR108Q9NPR9 543 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 YARSP54577 528 aaKnown RBP13.26□□□□□ -0.29
COL6A3-203ENST00000353578 P3H2Q8IVL5 708 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 ATPIF1Q9UII2 106 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 ATP6V1C1P21283 382 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 SPIDRQ14159 915 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 ARMCX5Q6P1M9 558 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 GIMAP8Q8ND71 665 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-203ENST00000353578 ACCSQ96QU6 501 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 MANSC1Q9H8J5 431 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 CYP4F11Q9HBI6 524 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 PCDHA4Q9UN74 947 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 TMED5Q9Y3A6 229 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 SNX2O60749 519 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 ATP6V1B1P15313 513 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 AKAP5P24588 427 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 MZT2BQ6NZ67 158 aa13.26□□□□□ -0.29
COL6A3-203ENST00000353578 TRIM74Q86UV6 250 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms