RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GZMAP12544 262 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 PDE6CP51160 858 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 PPARDQ03181 441 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 PDCLQ13371 301 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 CD302Q8IX05 232 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 UBLCP1Q8WVY7 318 aaPredicted RBP20.82■□□□□ 0.92
COL9A3-201ENST00000343916 KLRG1Q96E93 195 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 C12orf42Q96LP6 360 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 NUP85Q9BW27 656 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 ATP6V0A4Q9HBG4 840 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 TRPC6Q9Y210 931 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 SPDYE16A6NNV3 312 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-201ENST00000343916 CTNNA1P35221 906 aaKnown RBP20.81■□□□□ 0.92
COL9A3-201ENST00000343916 WNT7BP56706 349 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 DR1Q01658 176 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 MCPH1Q8NEM0 835 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 TMC2Q8TDI7 906 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 TMEM143Q96AN5 459 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 ZNF653Q96CK0 615 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 C18orf8Q96DM3 657 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 ZSWIM1Q9BR11 485 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 GGA3Q9NZ52 723 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 PPFIA4O75335 1185 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 KRT5P13647 590 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 MCCD1P59942 119 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-201ENST00000343916 BRDTQ58F21 947 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-201ENST00000343916 DLK2Q6UY11 383 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 ZDHHC14Q8IZN3 488 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 ZNF564Q8TBZ8 553 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-201ENST00000343916 SEC14L1Q92503 715 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 ZNF516Q92618 1163 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 ARHGAP28Q9P2N2 729 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 ARID2Q68CP9 1835 aa20.81■□□□□ 0.92
COL9A3-201ENST00000343916 GOLGA6L10A0A0M3HER8 536 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 C19orf81C9J6K1 198 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 CDR2Q01850 454 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 CNTN2Q02246 1040 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 LLGL1Q15334 1064 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 UBL4BQ8N7F7 174 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 ATP8B4Q8TF62 1192 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 DDX1Q92499 740 aaKnown RBP20.8■□□□□ 0.92
COL9A3-201ENST00000343916 LRRC45Q96CN5 670 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 IFT74Q96LB3 600 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 NAP1L3Q99457 506 aaPredicted RBP20.8■□□□□ 0.92
COL9A3-201ENST00000343916 ZNFX1Q9P2E3 1918 aaKnown RBP20.8■□□□□ 0.92
COL9A3-201ENST00000343916 SPATA31C2B4DYI2 1134 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 H0YGN5 161 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 CLSTN1O94985 981 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 ATP4AP20648 1035 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 GNPTABQ3T906 1256 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 ATP6V1G3Q96LB4 118 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 NFS1Q9Y697 457 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 MYH9P35579 1960 aaKnown RBP20.8■□□□□ 0.92
COL9A3-201ENST00000343916 NFASCO94856 1347 aa20.8■□□□□ 0.92
COL9A3-201ENST00000343916 MIF4GDA9UHW6 222 aaKnown RBP20.79■□□□□ 0.92
COL9A3-201ENST00000343916 EIF3HO15372 352 aaKnown RBP eCLIP20.79■□□□□ 0.922e-9■□□□□ 10.9
COL9A3-201ENST00000343916 ACOT2P49753 483 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 PEX5P50542 639 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 POLGP54098 1239 aaPredicted RBP20.79■□□□□ 0.92
COL9A3-201ENST00000343916 TMC3Q7Z5M5 1100 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 SYNGAP1Q96PV0 1343 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 TCRBV7S2A1N4TA0A589 114 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 GRIN3BO60391 1043 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 DKC1O60832 514 aaKnown RBP eCLIP20.79■□□□□ 0.92
COL9A3-201ENST00000343916 PYGMP11217 842 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 LIG4P49917 911 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 SKOR1P84550 965 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 DHX9Q08211 1270 aaKnown RBP20.79■□□□□ 0.92
COL9A3-201ENST00000343916 EMC2Q15006 297 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 TCEAL1Q15170 157 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 MIS18BP1Q6P0N0 1132 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 SEPT14Q6ZU15 432 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 BCAS4Q8TDM0 211 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 CDHR1Q96JP9 859 aa20.79■□□□□ 0.92
COL9A3-201ENST00000343916 ATP2A1O14983 1001 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 SPOPO43791 374 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 SUPT20HL2P0C7V6 817 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 NR1D1P20393 614 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 GUCY1A3Q02108 690 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 ZNF844Q08AG5 666 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 SUPT20HL1Q3ZLR7 823 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 USP37Q86T82 979 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 APOBEC3FQ8IUX4 373 aaKnown RBP20.78■□□□□ 0.92
COL9A3-201ENST00000343916 FAM114A2Q9NRY5 505 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 GARTP22102 1010 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 NLRP11P59045 1033 aaKnown RBP20.78■□□□□ 0.92
COL9A3-201ENST00000343916 C2CD6Q53TS8 623 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 XKR3Q5GH77 459 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 PHLDB2Q86SQ0 1253 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 PRELID2Q8N945 189 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 CD101Q93033 1021 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 ZBTB45Q96K62 511 aaPredicted RBP20.78■□□□□ 0.92
COL9A3-201ENST00000343916 RPS6KC1Q96S38 1066 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 ERP44Q9BS26 406 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 RAB17Q9H0T7 212 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 TMBIM4Q9HC24 238 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 LRRC4CQ9HCJ2 640 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 CD2APQ9Y5K6 639 aa20.78■□□□□ 0.92
COL9A3-201ENST00000343916 ZEB2O60315 1214 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 CYP1A2P05177 515 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms