RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PGM2Q96G03 612 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TRIM8Q9BZR9 551 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TFPTP0C1Z6 253 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RFX1P22670 979 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CD151P48509 253 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TTF1Q15361 905 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 HIBCHQ6NVY1 386 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 C16orf87Q6PH81 154 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RYBPQ8N488 228 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CEP70Q8NHQ1 597 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.76□□□□□ -1.813e-6■■□□□ 13.5
SYNE1-201ENST00000341594 CHKBQ9Y259 395 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CABIN1Q9Y6J0 2220 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SMARCA1P28370 1054 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RAP1GDS1P52306 607 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SLC9C2Q5TAH2 1124 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TMEM110Q86TL2 294 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SH3GLB2Q9NR46 395 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 IQANK1A0A1B0GTG1 560 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 KRT6AP02538 564 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 KRT6BP04259 564 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 KRT6CP48668 564 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 NLRP11P59045 1033 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 DYNLT1P63172 113 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 GABPAQ06546 454 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TUBA3EQ6PEY2 450 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MTHFD1LQ6UB35 978 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 DHX36Q9H2U1 1008 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TDRKHQ9Y2W6 561 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 DYNC1LI2O43237 492 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PAPD7Q5XG87 772 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 FAM219BQ5XKK7 198 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MINDY2Q8NBR6 621 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PBKQ96KB5 322 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PVALEFA0A1B0GWK0 134 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 EIF4A3P38919 411 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 STX3Q13277 289 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MAGEB6Q8N7X4 407 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CDHR1Q96JP9 859 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 NDE1Q9NXR1 346 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 VPS54Q9P1Q0 977 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MAN1B1Q9UKM7 699 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF318Q5VUA4 2279 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 NPEPPSP55786 919 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 AP2B1P63010 937 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SH3PXD2AQ5TCZ1 1133 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SCIMPQ6UWF3 145 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CYP4X1Q8N118 509 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 LSM14BQ9BX40 385 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 FAM117AQ9C073 453 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 BTBD18B2RXH4 712 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC15Q0P6D6 951 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CLMNQ96JQ2 1002 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TTC7AQ9ULT0 858 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 OPLAHO14841 1288 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 AKR1B10O60218 316 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CASP8Q14790 479 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZMYND11Q15326 602 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MYOCDQ8IZQ8 938 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 NAPBQ9H115 298 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PHF8Q9UPP1 1060 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ESYT2A0FGR8 921 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CCNFP41002 786 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF746Q6NUN9 644 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ANKMY2Q8IV38 441 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RABL2AQ9UBK7 228 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC61Q9Y6R9 512 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZGRF1Q86YA3 2104 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 A0A087WZG4 1122 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CCT8L1PA6NM43 557 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 STAT3P40763 770 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZCCHC8Q6NZY4 707 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 LMBR1LQ6UX01 489 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SLF2Q8IX21 1173 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 LRRC47Q8N1G4 583 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF831Q5JPB2 1677 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CIB2O75838 187 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SYF2O95926 243 aaKnown RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MESDQ14696 234 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MAP7D3Q8IWC1 876 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 ALLCQ8N6M5 410 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 NOX5Q96PH1 765 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PNKPQ96T60 521 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 FAM124BQ9H5Z6 455 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 TRAF5O00463 557 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MGRN1O60291 552 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 C2CD5Q86YS7 1000 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CYP4F11Q9HBI6 524 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 GPAA1O43292 621 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SASH3O75995 380 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PHBP35232 272 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RHBDL3P58872 404 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 PPP1R9AQ9ULJ8 1098 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CTNNA2P26232 953 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 CSTF2P33240 577 aaKnown RBP eCLIP3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RALGDSQ12967 914 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 SPATA1Q5VX52 437 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 GALNT15Q8N3T1 639 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 RETREG1Q9H6L5 497 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms