RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PLIN5Q00G26 463 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 TSPY1Q01534 308 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CACNB2Q08289 660 aaPredicted RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 NME3Q13232 169 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 MED21Q13503 144 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ZNF667Q5HYK9 610 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ANO5Q75V66 913 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ADGRF4Q8IZF3 695 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 PARD3BQ8TEW8 1205 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ANKS1AQ92625 1134 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 SNF8Q96H20 258 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 SGSM3Q96HU1 749 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 RMDN3Q96TC7 470 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 BARHL2Q9NY43 387 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 STX18Q9P2W9 335 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 CSADQ9Y600 493 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CNTRLQ7Z7A1 2325 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CSDE1O75534 798 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 MOCS2O96007 188 aaPredicted RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 COMTP21964 271 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 PAX7P23759 505 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 HIF1AQ16665 826 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 SWSAP1Q6NVH7 229 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CDR2LQ86X02 465 aaPredicted RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 MTBPQ96DY7 904 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ZMAT2Q96NC0 199 aaKnown RBP9.2□□□□□ -0.94
RTN3-202ENST00000339997 RPS6KC1Q96S38 1066 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 EDEM3Q9BZQ6 932 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 PCMTD2Q9NV79 361 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 HSPBP1Q9NZL4 362 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 ALG6Q9Y672 507 aa9.2□□□□□ -0.94
RTN3-202ENST00000339997 CFAP73A6NFT4 308 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 ZBTB39O15060 712 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 HIC1Q14526 733 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 FAM102AQ5T9C2 384 aaPredicted RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 UTS2BQ765I0 119 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 SPDYE1Q8NFV5 336 aaPredicted RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 LXNQ9BS40 222 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 SLITRK6Q9H5Y7 841 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 PI4KBQ9UBF8 816 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 CAND2O75155 1236 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 LGR5O75473 907 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 DNAJC8O75937 253 aaPredicted RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 GLI1P08151 1106 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 CTCFP49711 727 aaPredicted RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 RGS7P49802 495 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 MTMR1Q13613 665 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 EXOC8Q8IYI6 725 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 SGF29Q96ES7 293 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 DHX36Q9H2U1 1008 aaKnown RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 ZNF229Q9UJW7 825 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 HEG1Q9ULI3 1381 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 HADHAP40939 763 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 PSMC5P62195 406 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 LVRNQ6Q4G3 990 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 PPP4R3CPQ6ZMV5 832 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 RINLQ6ZS11 566 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 SGMS1Q86VZ5 419 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 ARID3BQ8IVW6 561 aaPredicted RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 AGPAT1Q99943 283 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 TSSK1BQ9BXA7 367 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 RAB6BQ9NRW1 208 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 NEU2Q9Y3R4 380 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 CENPFP49454 3210 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 UBE4BO95155 1302 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 MYO3BQ8WXR4 1341 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 LINC00854A0A1B0GVQ3 168 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 F5H6K3 240 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 M0QYV0 167 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 SKOR1P84550 965 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 KLRC3Q07444 240 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 ZNF699Q32M78 642 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 PPP4R4Q6NUP7 873 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 PID1Q7Z2X4 250 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 DDIASQ8IXT1 998 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 C18orf8Q96DM3 657 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 HAUS8Q9BT25 410 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 UNC45AQ9H3U1 944 aa9.19□□□□□ -0.94
RTN3-202ENST00000339997 SUCLA2Q9P2R7 463 aaPredicted RBP9.19□□□□□ -0.94
RTN3-202ENST00000339997 AATKQ6ZMQ8 1374 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 PPP1R3GB7ZBB8 358 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 STXBP3O00186 592 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 SYF2O95926 243 aaKnown RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 LMNAP02545 664 aaKnown RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 FOXO4P98177 505 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 OCA2Q04671 838 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 C3orf62Q6ZUJ4 267 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 HAUS6Q7Z4H7 955 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 KIAA2013Q8IYS2 634 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 PROM2Q8N271 834 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 SLC25A41Q8N5S1 370 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 FBXO25Q8TCJ0 367 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 TEKT4Q8WW24 435 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 NRBF2Q96F24 287 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 EIF2AK1Q9BQI3 630 aaKnown RBP9.18□□□□□ -0.94
RTN3-202ENST00000339997 ANKZF1Q9H8Y5 726 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 VIPAS39Q9H9C1 493 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 GABBR1Q9UBS5 961 aa9.18□□□□□ -0.94
RTN3-202ENST00000339997 SUN2Q9UH99 717 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms