RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ASNSD1Q9NWL6 643 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 SNX9Q9Y5X1 595 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 SNCAIPQ9Y6H5 919 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 NRCAMQ92823 1304 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 SLC1A1P43005 524 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 NOVP48745 357 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 RNASE9P60153 205 aaKnown RBP7.33□□□□□ -1.24
SF3B1-201ENST00000335508 KRT81Q14533 505 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 KRT71Q3SY84 523 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 CCDC25Q86WR0 208 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 KLHL7Q8IXQ5 586 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 ETNPPLQ8TBG4 499 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 PSMB7Q99436 277 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 MTG1Q9BT17 334 aaPredicted RBP7.33□□□□□ -1.24
SF3B1-201ENST00000335508 CFAP69A5D8W1 941 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 MX2P20592 715 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 TAF6P49848 677 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 FXR1P51114 621 aaKnown RBP eCLIP7.33□□□□□ -1.241e-6■■■■□ 20.1
SF3B1-201ENST00000335508 CLCN3P51790 818 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 NCAPHQ15003 741 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 BOLA3Q53S33 107 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 C1orf186Q6ZWK4 172 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 RHOT1Q8IXI2 618 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 RSAD2Q8WXG1 361 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 PDGFDQ9GZP0 370 aaPredicted RBP7.33□□□□□ -1.24
SF3B1-201ENST00000335508 FBXL5Q9UKA1 691 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 SETD1AO15047 1707 aaKnown RBP7.33□□□□□ -1.24
SF3B1-201ENST00000335508 C17orf102A2RUQ5 167 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 TMEM253P0C7T8 217 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 ACVR2BQ13705 512 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 BMT2Q1RMZ1 405 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 APPL2Q8NEU8 664 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 SEPT8Q92599 483 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 ATP2A3Q93084 1043 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 TMEM169Q96HH4 297 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 PPP1R13BQ96KQ4 1090 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 SLC45A1Q9Y2W3 748 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 PCDHA13Q9Y5I0 950 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 SLMAPQ14BN4 828 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 KLHDC7AQ5VTJ3 777 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 FBXO16Q8IX29 292 aaPredicted RBP7.33□□□□□ -1.24
SF3B1-201ENST00000335508 PARD3BQ8TEW8 1205 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 RUSC1Q9BVN2 902 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 FOXP3Q9BZS1 431 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 TMEM134Q9H6X4 195 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.33□□□□□ -1.24
SF3B1-201ENST00000335508 ANAPC7Q9UJX3 599 aa7.33□□□□□ -1.24
SF3B1-201ENST00000335508 ZNF541Q9H0D2 1346 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 MCF2LO15068 1137 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 TRPA1O75762 1119 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 GNA15P30679 374 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ACADSBP45954 432 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ACOT2P49753 483 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 LRRC31Q6UY01 552 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 USP38Q8NB14 1042 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 PDE11AQ9HCR9 933 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 WDR70Q9NW82 654 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 TMEM88BA6NKF7 163 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 SMAPO00193 183 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 AKAP3O75969 853 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 PARNO95453 639 aaKnown RBP7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ITGA4P13612 1032 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ATICP31939 592 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 SERPINB6P35237 376 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 TC2NQ8N9U0 490 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 RSPH1Q8WYR4 309 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 PORCNQ9H237 461 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 KANSL3Q9P2N6 904 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 INPP5FQ9Y2H2 1132 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 C10orf71Q711Q0 1435 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ERCC6LQ2NKX8 1250 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.32□□□□□ -1.24
SF3B1-201ENST00000335508 TLK2Q86UE8 772 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ACRBPQ8NEB7 543 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 INTS13Q9NVM9 706 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 EVI5O60447 810 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 F9P00740 461 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 GTF2BQ00403 316 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 NAB2Q15742 525 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 NPY5RQ15761 445 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 SLC27A1Q6PCB7 646 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 RASGRP2Q7LDG7 609 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 LRRC71Q8N4P6 559 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 CDKL2Q92772 493 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 DNAJC19Q96DA6 116 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 CALN1Q9BXU9 219 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 RRAGCQ9HB90 399 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 XPNPEP3Q9NQH7 507 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 STARD7Q9NQZ5 370 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 NAGPAQ9UK23 515 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 TOMM70O94826 608 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ECEL1O95672 775 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 PSMC1P62191 440 aaKnown RBP7.32□□□□□ -1.24
SF3B1-201ENST00000335508 ZC2HC1CQ53FD0 456 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-201ENST00000335508 RBBP8NLQ8NC74 664 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-201ENST00000335508 SLITRK6Q9H5Y7 841 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 FAM124BQ9H5Z6 455 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-201ENST00000335508 CPSF3Q9UKF6 684 aaKnown RBP7.32□□□□□ -1.24
SF3B1-201ENST00000335508 CACNA1HO95180 2353 aa7.32□□□□□ -1.24
SF3B1-201ENST00000335508 TRIOBPQ9H2D6 2365 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms