RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 MYLIPQ8WY64 445 aa17.38■□□□□ 0.37
CCDC28A-201ENST00000332797 RPS6KC1Q96S38 1066 aa17.38■□□□□ 0.37
CCDC28A-201ENST00000332797 CCDC94Q9BW85 323 aaPredicted RBP17.38■□□□□ 0.37
CCDC28A-201ENST00000332797 HAPLN2Q9GZV7 340 aa17.38■□□□□ 0.37
CCDC28A-201ENST00000332797 SLC39A2Q9NP94 309 aa17.38■□□□□ 0.37
CCDC28A-201ENST00000332797 AAASQ9NRG9 546 aa17.38■□□□□ 0.37
CCDC28A-201ENST00000332797 ZMYM2Q9UBW7 1377 aa17.38■□□□□ 0.37
CCDC28A-201ENST00000332797 KINO60870 393 aaKnown RBP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 ZC3H11AO75152 810 aaKnown RBP eCLIP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 PNOCQ13519 176 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 SEZ6Q53EL9 994 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 CCDC47Q96A33 483 aaKnown RBP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 GBP4Q96PP9 640 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 GAS2L1Q99501 681 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 MSTO1Q9BUK6 570 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 KANSL3Q9P2N6 904 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 PCDHB12Q9Y5F1 795 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 TRANK1O15050 2925 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 CDH23Q9H251 3354 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 C5orf67F2Z3F1 127 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 INPPL1O15357 1258 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 EIF3DO15371 548 aaKnown RBP eCLIP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 RB1P06400 928 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 PBX3P40426 434 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 YARSP54577 528 aaKnown RBP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 GPM6BQ13491 265 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 TIGD1Q96MW7 591 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 ZNF558Q96NG5 402 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 ACAP3Q96P50 834 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 FAM193BQ96PV7 902 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 C11orf84Q9BUA3 381 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 PLVAPQ9BX97 442 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 TMEM206Q9H813 350 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 MIOSQ9NXC5 875 aa17.37■□□□□ 0.37
CCDC28A-201ENST00000332797 A0A0B4J269 797 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 H3BNC9 293 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 B4GALT3O60512 393 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 SLFN12LQ6IEE8 588 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 KCNT2Q6UVM3 1135 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 EPM2AIP1Q7L775 607 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 ZNF280BQ86YH2 543 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 KLHL23Q8NBE8 558 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 CXCL16Q9H2A7 254 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 NRDE2Q9H7Z3 1164 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 TOPORSQ9NS56 1045 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 DNAJB4Q9UDY4 337 aa17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 HOOK1Q9UJC3 728 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-201ENST00000332797 UBE4BO95155 1302 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 OGTO15294 1046 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 DDHD2O94830 711 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 FOSL2P15408 326 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 IGFBP4P22692 258 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 BCAR1P56945 870 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 GRIK3Q13003 919 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 STK4Q13043 487 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 PSMD2Q13200 908 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 ADGRE1Q14246 886 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 NELFCDQ8IXH7 590 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 KIAA0895Q8NCT3 520 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 GSTCDQ8NEC7 633 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 ZNF507Q8TCN5 953 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 SCFD1Q8WVM8 642 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 POMGNT1Q8WZA1 660 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 PLAGL2Q9UPG8 496 aa17.35■□□□□ 0.37
CCDC28A-201ENST00000332797 TDRD15B5MCY1 1934 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 NT5C1B-RDH14C9J2C7 533 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 PTGESO14684 152 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 LPXNO60711 386 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 HOXD13P35453 343 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 TNFSF9P41273 254 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 ALDH7A1P49419 539 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 GLRA4Q5JXX5 417 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 ZBTB41Q5SVQ8 909 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 ERCC4Q92889 916 aaPredicted RBP17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 P2RX5Q93086 422 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 SNX27Q96L92 541 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 ALG13Q9NP73 1137 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 AGO2Q9UKV8 859 aaKnown RBP17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 STYXL1Q9Y6J8 313 aa17.34■□□□□ 0.37
CCDC28A-201ENST00000332797 FAM189A1O60320 539 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 FGF18O76093 207 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 RHOBTB3O94955 611 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 CSPG5O95196 566 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 SMC2O95347 1197 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 ITGB1P05556 798 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 THP07101 528 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 CLTAP09496 248 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 CXCL8P10145 99 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 ADSSP30520 456 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 PPM1AP35813 382 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 SLC11A1P49279 550 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 KCNB1Q14721 858 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 KYAT1Q16773 422 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 BMT2Q1RMZ1 405 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 SPG21Q9NZD8 308 aa17.33■□□□□ 0.37
CCDC28A-201ENST00000332797 GRM6O15303 877 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 GALTP07902 379 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 GARTP22102 1010 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 OR1G1P47890 313 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 ACOT2P49753 483 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms