RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 SNRPFP62306 86 aaKnown RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 KRT31Q15323 416 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 EPC2Q52LR7 807 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 ODR4Q5SWX8 454 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 UBXN11Q5T124 520 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 APTXQ7Z2E3 356 aaKnown RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 TMC6Q7Z403 805 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 SRGAP1Q7Z6B7 1085 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 FILIP1Q7Z7B0 1213 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 CCDC112Q8NEF3 446 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 GOLGA5Q8TBA6 731 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 LPPQ93052 612 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 CPB2Q96IY4 423 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 NAP1L5Q96NT1 182 aaPredicted RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 KIFC3Q9BVG8 833 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 C1orf112Q9NSG2 853 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 CGNQ9P2M7 1197 aaKnown RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 ADGRA3Q8IWK6 1321 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 BRWD1Q9NSI6 2320 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 NPHP3-ACAD11A0A0J9YXS1 232 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 A0A0U1RQF3 1178 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 A0A1W2PQC6 194 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 SFI1A8K8P3 1242 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 N4BP3O15049 544 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 TPM1P09493 284 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 SFPQP23246 707 aaKnown RBP eCLIP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 COPB1P53618 953 aaKnown RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 RAD51AP2Q09MP3 1159 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 MAPK7Q13164 816 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 BTG3Q14201 252 aaPredicted RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 CCDC85BQ15834 202 aaPredicted RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 KNOP1Q1ED39 458 aaKnown RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 ZCWPW2Q504Y3 356 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 CLLU1OSQ5K130 101 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 LRRC55Q6ZSA7 311 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 CDR2LQ86X02 465 aaPredicted RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 IFNLR1Q8IU57 520 aaPredicted RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 LRRC8AQ8IWT6 810 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 ZC3H3Q8IXZ2 948 aaKnown RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 TMEM192Q8IY95 271 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 FIBCD1Q8N539 461 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 MYCT1Q8N699 235 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 RNF169Q8NCN4 708 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 MCPH1Q8NEM0 835 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 ST6GALNAC4Q9H4F1 302 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 ZHX3Q9H4I2 956 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 MRPL44Q9H9J2 332 aaKnown RBP17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 AGPAT5Q9NUQ2 364 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 TMEM161AQ9NX61 479 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 LRFN2Q9ULH4 789 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 MTCH2Q9Y6C9 303 aa17.95■□□□□ 0.46
PDLIM1-201ENST00000329399 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.95■□□□□ 0.467e-8■□□□□ 9
PDLIM1-201ENST00000329399 INO80B-WBP1J3KQ70 363 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 TSPAN1O60635 241 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 STAG3L1P0CL83 205 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 PHKA2P46019 1235 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 PMS1P54277 932 aaKnown RBP17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 PPP2R3AQ06190 1150 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 POU5F1BQ06416 359 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 MYBPC2Q14324 1141 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 SFR1Q86XK3 245 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 IRF2BP1Q8IU81 584 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 MAFAQ8NHW3 353 aaPredicted RBP17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 TMEM174Q8WUU8 243 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 SCFD1Q8WVM8 642 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 PPM1EQ8WY54 764 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 KIFAP3Q92845 792 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 CLP1Q92989 425 aaKnown RBP17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 CASD1Q96PB1 797 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 EIF2AQ9BY44 585 aaKnown RBP17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 INO80BQ9C086 356 aaPredicted RBP17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 KCTD10Q9H3F6 313 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 PRDM6Q9NQX0 595 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 CHST12Q9NRB3 414 aa17.94■□□□□ 0.46
PDLIM1-201ENST00000329399 TRIM49BA6NDI0 452 aa17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 LRRIQ4A6NIV6 560 aa17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 TBKBP1A7MCY6 615 aa17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 H0YCG3 227 aa17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 ZNF500O60304 480 aaPredicted RBP17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 AFF1P51825 1210 aaKnown RBP17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 MARSP56192 900 aaKnown RBP17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 TWF2Q6IBS0 349 aaKnown RBP17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 FAM178BQ8IXR5 827 aa17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 HVCN1Q96D96 273 aa17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 GAS2L1Q99501 681 aaPredicted RBP17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 ELAC1Q9H777 363 aaKnown RBP17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 TYW1Q9NV66 732 aaKnown RBP17.93■□□□□ 0.46
PDLIM1-201ENST00000329399 LGALS16A8MUM7 142 aa17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 CETN3O15182 167 aa17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 HIP1RO75146 1068 aa17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 PLS3P13797 630 aa17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 ARF4P18085 180 aaPredicted RBP17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 BMPR1AP36894 532 aa17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 PBX1P40424 430 aa17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 CACNB1Q02641 598 aaPredicted RBP17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 TBX2Q13207 712 aaPredicted RBP17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 CDCA2Q69YH5 1023 aaPredicted RBP17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 ZNF720Q7Z2F6 126 aa17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 CMTR2Q8IYT2 770 aaKnown RBP17.92■□□□□ 0.46
PDLIM1-201ENST00000329399 FBXO22Q8NEZ5 403 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms