RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PLS3P13797 630 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 BMS1Q14692 1282 aaKnown RBP17.92■□□□□ 0.46
LSM1-201ENST00000311351 ZNF568Q3ZCX4 644 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 SYCE2Q6PIF2 218 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 TAS1R1Q7RTX1 841 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 RAD54LQ92698 747 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 CLIC6Q96NY7 704 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 ACO2Q99798 780 aaKnown RBP17.92■□□□□ 0.46
LSM1-201ENST00000311351 REEP2Q9BRK0 252 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 MRPL4Q9BYD3 311 aaKnown RBP17.92■□□□□ 0.46
LSM1-201ENST00000311351 TMEM134Q9H6X4 195 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 C17orf75Q9HAS0 396 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 KCND2Q9NZV8 630 aa17.92■□□□□ 0.46
LSM1-201ENST00000311351 PDCD11Q14690 1871 aaKnown RBP17.91■□□□□ 0.46
LSM1-201ENST00000311351 CASTOR2A6NHX0 329 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 C19orf67A6NJJ6 358 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 EFEMP2O95967 443 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 URODP06132 367 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 HARSP12081 509 aaKnown RBP17.91■□□□□ 0.46
LSM1-201ENST00000311351 EPCAMP16422 314 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 GLRA4Q5JXX5 417 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 FOXD4L5Q5VV16 416 aaPredicted RBP17.91■□□□□ 0.46
LSM1-201ENST00000311351 ZBTB33Q86T24 672 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 RNF168Q8IYW5 571 aaPredicted RBP17.91■□□□□ 0.46
LSM1-201ENST00000311351 TMEM161BQ8NDZ6 487 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 SPIRE2Q8WWL2 714 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 FOXD4L4Q8WXT5 416 aaPredicted RBP17.91■□□□□ 0.46
LSM1-201ENST00000311351 CASP10Q92851 521 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 B3GALT6Q96L58 329 aa17.91■□□□□ 0.46
LSM1-201ENST00000311351 RBM19Q9Y4C8 960 aaKnown RBP17.91■□□□□ 0.46
LSM1-201ENST00000311351 VWA8A3KMH1 1905 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 ABLIM1O14639 778 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 NR1I2O75469 434 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 MAPTP10636 758 aaKnown RBP17.9■□□□□ 0.46
LSM1-201ENST00000311351 GLUD2P49448 558 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 OSTNP61366 133 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 TUSC3Q13454 348 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 GIT2Q14161 759 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 NAB2Q15742 525 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 FUT10Q6P4F1 479 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 TMEM87AQ8NBN3 555 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 HASPINQ8TF76 798 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 SLC22A17Q8WUG5 538 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 SUSD6Q92537 303 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 LARP4BQ92615 738 aaKnown RBP17.9■□□□□ 0.46
LSM1-201ENST00000311351 KLHL5Q96PQ7 755 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 COLEC11Q9BWP8 271 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 GPR62Q9BZJ7 368 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 CCSER1Q9C0I3 900 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 S1PR5Q9H228 398 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 PTPRHQ9HD43 1115 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 MRPL17Q9NRX2 175 aaKnown RBP17.9■□□□□ 0.46
LSM1-201ENST00000311351 ADAM28Q9UKQ2 775 aa17.9■□□□□ 0.46
LSM1-201ENST00000311351 SRPRBQ9Y5M8 271 aaKnown RBP17.9■□□□□ 0.46
LSM1-201ENST00000311351 LILRB3O75022 631 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 KIF4AO95239 1232 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 THP07101 528 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 CNPP09543 421 aaKnown RBP17.89■□□□□ 0.45
LSM1-201ENST00000311351 PROZP22891 400 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 GRM5P41594 1212 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 SMTNP53814 917 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 NCKAP1LP55160 1127 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 HSP90AA2PQ14568 343 aaPredicted RBP17.89■□□□□ 0.45
LSM1-201ENST00000311351 KANK3Q6NY19 840 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 C12orf76Q8N812 135 aaPredicted RBP17.89■□□□□ 0.45
LSM1-201ENST00000311351 FEZF2Q8TBJ5 459 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 ZBTB45Q96K62 511 aaPredicted RBP17.89■□□□□ 0.45
LSM1-201ENST00000311351 POP1Q99575 1024 aaKnown RBP17.89■□□□□ 0.45
LSM1-201ENST00000311351 NTPCRQ9BSD7 190 aaKnown RBP17.89■□□□□ 0.45
LSM1-201ENST00000311351 EMILIN2Q9BXX0 1053 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 ZSCAN16Q9H4T2 348 aaPredicted RBP17.89■□□□□ 0.45
LSM1-201ENST00000311351 ANKFY1Q9P2R3 1169 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 STK39Q9UEW8 545 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 ODF2LQ9ULJ1 636 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 C2orf16Q68DN1 1984 aa17.89■□□□□ 0.45
LSM1-201ENST00000311351 FAM13AO94988 1023 aa17.88■□□□□ 0.45
LSM1-201ENST00000311351 KRT18P05783 430 aaKnown RBP17.88■□□□□ 0.45
LSM1-201ENST00000311351 WEE2P0C1S8 567 aa17.88■□□□□ 0.45
LSM1-201ENST00000311351 HOXB8P17481 243 aaPredicted RBP17.88■□□□□ 0.45
LSM1-201ENST00000311351 STRN3Q13033 797 aa17.88■□□□□ 0.45
LSM1-201ENST00000311351 RARS2Q5T160 578 aaKnown RBP17.88■□□□□ 0.45
LSM1-201ENST00000311351 MPZL3Q6UWV2 235 aa17.88■□□□□ 0.45
LSM1-201ENST00000311351 APBB1IPQ7Z5R6 666 aaPredicted RBP17.88■□□□□ 0.45
LSM1-201ENST00000311351 SPRYD3Q8NCJ5 442 aa17.88■□□□□ 0.45
LSM1-201ENST00000311351 CCDC94Q9BW85 323 aaPredicted RBP17.88■□□□□ 0.45
LSM1-201ENST00000311351 LARSQ9P2J5 1176 aaKnown RBP17.88■□□□□ 0.45
LSM1-201ENST00000311351 DENND4AQ7Z401 1863 aa17.88■□□□□ 0.45
LSM1-201ENST00000311351 FAM86C2PA6NEL3 165 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 K7ENM7 598 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 TEX28O15482 410 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 HSP90AA1P07900 732 aaKnown RBP17.87■□□□□ 0.45
LSM1-201ENST00000311351 MCF2P10911 925 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 KLRC2P26717 231 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 NASPP49321 788 aaPredicted RBP17.87■□□□□ 0.45
LSM1-201ENST00000311351 CLCN4P51793 760 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 ZNF131P52739 623 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 DSG1Q02413 1049 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 CBX2Q14781 532 aaPredicted RBP17.87■□□□□ 0.45
LSM1-201ENST00000311351 SLC39A14Q15043 492 aa17.87■□□□□ 0.45
LSM1-201ENST00000311351 TPRNQ4KMQ1 711 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms