RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TDRD5Q8NAT2 981 aaKnown RBP21.5■■□□□ 1.03
LIME1-201ENST00000309546 PAAF1Q9BRP4 392 aa21.5■■□□□ 1.03
LIME1-201ENST00000309546 MMTAG2Q9BU76 263 aaKnown RBP21.5■■□□□ 1.03
LIME1-201ENST00000309546 GPR62Q9BZJ7 368 aa21.5■■□□□ 1.03
LIME1-201ENST00000309546 MAN1C1Q9NR34 630 aa21.5■■□□□ 1.03
LIME1-201ENST00000309546 ARIH1Q9Y4X5 557 aaPredicted RBP21.5■■□□□ 1.03
LIME1-201ENST00000309546 TRIP11Q15643 1979 aa21.5■■□□□ 1.03
LIME1-201ENST00000309546 VWA3AA6NCI4 1184 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 K7ERI5 159 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 PTGESO14684 152 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 TADA2AO75478 443 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 EFEMP2O95967 443 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 GLUD1P00367 558 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 DSG1Q02413 1049 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 DMP1Q13316 513 aaPredicted RBP21.49■■□□□ 1.03
LIME1-201ENST00000309546 TUSC3Q13454 348 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 HSP90AA2PQ14568 343 aaPredicted RBP21.49■■□□□ 1.03
LIME1-201ENST00000309546 USP41Q3LFD5 358 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 ATF7IP2Q5U623 682 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 KIAA0319Q5VV43 1072 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 GLYCTKQ8IVS8 523 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 MFSD14AQ96MC6 490 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 PLIN2Q99541 437 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 CXCL16Q9H2A7 254 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.49■■□□□ 1.03
LIME1-201ENST00000309546 PHLPP2Q6ZVD8 1323 aa21.49■■□□□ 1.03
LIME1-201ENST00000309546 THP07101 528 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 SIGLEC14Q08ET2 396 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 NT5DC1Q5TFE4 455 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 RINT1Q6NUQ1 792 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 DAW1Q8N136 415 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 RIN2Q8WYP3 895 aaPredicted RBP21.48■■□□□ 1.03
LIME1-201ENST00000309546 PBXIP1Q96AQ6 731 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 CDK5RAP3Q96JB5 506 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 DRC1Q96MC2 740 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 KMT5AQ9NQR1 393 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 MYO10Q9HD67 2058 aa21.48■■□□□ 1.03
LIME1-201ENST00000309546 NPTX2P47972 431 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 RAD51AP2Q09MP3 1159 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 GLRA4Q5JXX5 417 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 LARP1BQ659C4 914 aaKnown RBP21.47■■□□□ 1.03
LIME1-201ENST00000309546 CCDC149Q6ZUS6 474 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 APBB1IPQ7Z5R6 666 aaPredicted RBP21.47■■□□□ 1.03
LIME1-201ENST00000309546 GPR149Q86SP6 731 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 PALB2Q86YC2 1186 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 RXFP1Q9HBX9 757 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 CHST7Q9NS84 486 aa21.47■■□□□ 1.03
LIME1-201ENST00000309546 SF3B1O75533 1304 aaKnown RBP eCLIP21.47■■□□□ 1.03
LIME1-201ENST00000309546 MTCL1Q9Y4B5 1905 aaKnown RBP21.47■■□□□ 1.03
LIME1-201ENST00000309546 KIF4AO95239 1232 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 SPATA31D3P0C874 917 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 RPL17P18621 184 aaKnown RBP21.46■■□□□ 1.03
LIME1-201ENST00000309546 ZNF568Q3ZCX4 644 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 ELMSAN1Q6PJG2 1045 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 SPATA31D4Q6ZUB0 917 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 C1orf186Q6ZWK4 172 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 SUGP1Q8IWZ8 645 aaKnown RBP21.46■■□□□ 1.03
LIME1-201ENST00000309546 KREMEN2Q8NCW0 462 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 PNMA5Q96PV4 448 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 NT5C3AQ9H0P0 336 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.46■■□□□ 1.03
LIME1-201ENST00000309546 TNFSF13BQ9Y275 285 aa21.46■■□□□ 1.03
LIME1-201ENST00000309546 ZNF318Q5VUA4 2279 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 SFI1A8K8P3 1242 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 ASGR2P07307 311 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 MAPK7Q13164 816 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 RTP2Q5QGT7 225 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 PRSS55Q6UWB4 352 aaPredicted RBP21.45■■□□□ 1.02
LIME1-201ENST00000309546 CEP57Q86XR8 500 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 MRPL4Q9BYD3 311 aaKnown RBP21.45■■□□□ 1.02
LIME1-201ENST00000309546 DPP7Q9UHL4 492 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 TRIOO75962 3097 aa21.45■■□□□ 1.02
LIME1-201ENST00000309546 SLC16A4O15374 487 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 OSTNP61366 133 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 CREMQ03060 361 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 MTMR3Q13615 1198 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 NAB2Q15742 525 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 HYIQ5T013 277 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 FAM171A1Q5VUB5 890 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 ARL6IP4Q66PJ3 421 aaKnown RBP21.44■■□□□ 1.02
LIME1-201ENST00000309546 C15orf39Q6ZRI6 1047 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 BMP8AQ7Z5Y6 402 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 CEP120Q8N960 986 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 ACO2Q99798 780 aaKnown RBP21.44■■□□□ 1.02
LIME1-201ENST00000309546 TARS2Q9BW92 718 aaKnown RBP21.44■■□□□ 1.02
LIME1-201ENST00000309546 CDT1Q9H211 546 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 TMEM134Q9H6X4 195 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 ARHGAP28Q9P2N2 729 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 SORCS3Q9UPU3 1222 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 USTQ9Y2C2 406 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 VWA8A3KMH1 1905 aa21.44■■□□□ 1.02
LIME1-201ENST00000309546 KMT2EQ8IZD2 1858 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 CITO14578 2027 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 CCDC195A0A1B0GUA6 201 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 TGM5O43548 720 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 RFPL2O75678 378 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 HARSP12081 509 aaKnown RBP21.43■■□□□ 1.02
LIME1-201ENST00000309546 GUCY2CP25092 1073 aa21.43■■□□□ 1.02
LIME1-201ENST00000309546 YARSP54577 528 aaKnown RBP21.43■■□□□ 1.02
LIME1-201ENST00000309546 TAS1R3Q7RTX0 852 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms