RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 COPB2P35606 906 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 MLH1P40692 756 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 TSPAN17Q96FV3 270 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 RNPC3Q96LT9 517 aaKnown RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 NLRP4Q96MN2 994 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 NDFIP2Q9NV92 336 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 DCDC2Q9UHG0 476 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 PLOD1Q02809 727 aaPredicted RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 GPR141Q7Z602 305 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 RFWD2Q8NHY2 731 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 MTERF3Q96E29 417 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 UBTFL6P0CB48 400 aaPredicted RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 ADORA1P30542 326 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 EFHC2Q5JST6 749 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 RAB42Q8N4Z0 105 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 FAM162AQ96A26 154 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 COA7Q96BR5 231 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 TRIM62Q9BVG3 475 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 A0A1W2PQC6 194 aa14.62□□□□□ -0.07
CSPG4-201ENST00000308508 UBA6A0AVT1 1052 aaPredicted RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 XPO1O14980 1071 aaKnown RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 DNMT1P26358 1616 aaKnown RBP14.62□□□□□ -0.07
CSPG4-201ENST00000308508 CCT8L1PA6NM43 557 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 RMDN1Q96DB5 314 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 ERP27Q96DN0 273 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 LAMC3Q9Y6N6 1575 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 ORC2Q13416 577 aaPredicted RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 GGT7Q9UJ14 662 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 XDHP47989 1333 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 ALBP02768 609 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 Q3C1V9 767 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 MCPH1Q8NEM0 835 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 MKL2Q9ULH7 1088 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 ZMYND8Q9ULU4 1186 aaPredicted RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 STK36Q9NRP7 1315 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 TRIM66O15016 1216 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 CTCFP49711 727 aaPredicted RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 DHX40Q8IX18 779 aaKnown RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 EPS8L2Q9H6S3 715 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 AMACRQ9UHK6 382 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 SERPINB13Q9UIV8 391 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 KIF1BO60333 1816 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 P3H2Q8IVL5 708 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 EXOSC4Q9NPD3 245 aaKnown RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 ZSWIM5Q9P217 1185 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 SPDYE5A6NIY4 337 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 VSNL1P62760 191 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 SPDYE7PQ495Y7 208 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 ZNF507Q8TCN5 953 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 SH3KBP1Q96B97 665 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 SNX12Q9UMY4 172 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 SERPINB9P50453 376 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 AP3B2Q13367 1082 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 DRAP1Q14919 205 aaPredicted RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 ZCWPW2Q504Y3 356 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 RIBC1Q8N443 379 aaPredicted RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 DIS3LQ8TF46 1054 aaKnown RBP14.61□□□□□ -0.07
CSPG4-201ENST00000308508 C11orf70Q9BRQ4 267 aa14.61□□□□□ -0.07
CSPG4-201ENST00000308508 RPAP1Q9BWH6 1393 aaPredicted RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 TRIM49BA6NDI0 452 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 VAMP7P51809 220 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 CTTNQ14247 550 aaKnown RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 KNOP1Q1ED39 458 aaKnown RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 SPDYAQ5MJ70 313 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 PKN3Q6P5Z2 889 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 NLRP10Q86W26 655 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 UNC5CLQ8IV45 518 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 RSPH1Q8WYR4 309 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 LEMD3Q9Y2U8 911 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 PRPF39Q86UA1 669 aaKnown RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 KLHL31Q9H511 634 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 EIF2S1P05198 315 aaKnown RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 SLC16A2P36021 539 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 LAMB3Q13751 1172 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 C6orf10Q5SRN2 563 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 ZFP42Q96MM3 310 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 KLHL25Q9H0H3 589 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 ALG13Q9NP73 1137 aaKnown RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 UTP6Q9NYH9 597 aaKnown RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 APPL1Q9UKG1 709 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 CDY2AQ9Y6F7 541 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 CDY1Q9Y6F8 540 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 SHANK2Q9UPX8 1470 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 NUP62P37198 522 aaPredicted RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 GCLMP48507 274 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 ARHGAP17Q68EM7 881 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 LVRNQ6Q4G3 990 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 EFHBQ8N7U6 833 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 C1orf54Q8WWF1 131 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 TOPORSQ9NS56 1045 aaPredicted RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 UVRAGQ9P2Y5 699 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 PHF2O75151 1096 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 KCNJ6P48051 423 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 ARMCX4Q5H9R4 360 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 FGD2Q7Z6J4 655 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 CCDC24Q8N4L8 307 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 GIMAP8Q8ND71 665 aaPredicted RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 OSBPL10Q9BXB5 764 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 UGP2Q16851 508 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 MOV10L1Q9BXT6 1211 aaKnown RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms