RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RHOBTB3O94955 611 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 OSBPP22059 807 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 GALCP54803 685 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 RNF139Q8WU17 664 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 MTO1Q9Y2Z2 717 aaKnown RBP18.34■□□□□ 0.53
SYNPO-201ENST00000307662 PALLDQ8WX93 1383 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 HNRNPCL2B2RXH8 293 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 CLDN3O15551 220 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 ANP32DO95626 131 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 TAP1Q03518 808 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 P3H1Q32P28 736 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 JAMLQ86YT9 394 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 OR9Q1Q8NGQ5 310 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 MTBPQ96DY7 904 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 ASCC2Q9H1I8 757 aaPredicted RBP18.34■□□□□ 0.53
SYNPO-201ENST00000307662 CPDO75976 1380 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 VHLP40337 213 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 THNSL1Q8IYQ7 743 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 SLC13A4Q9UKG4 626 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 NAB2Q15742 525 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 WDR93Q6P2C0 686 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 C4orf33Q8N1A6 199 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 CCDC134Q9H6E4 229 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 BFARQ9NZS9 450 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 MRPS15P82914 257 aaKnown RBP18.33■□□□□ 0.53
SYNPO-201ENST00000307662 INPP5AQ14642 412 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 CATSPER3Q86XQ3 398 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 USP6NLQ92738 828 aa18.33■□□□□ 0.53
SYNPO-201ENST00000307662 LBHD1Q9BQE6 289 aaPredicted RBP18.33■□□□□ 0.53
SYNPO-201ENST00000307662 OLA1Q9NTK5 396 aaKnown RBP18.33■□□□□ 0.53
SYNPO-201ENST00000307662 TMEM179Q6ZVK1 233 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 ACAP3Q96P50 834 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 AURKCQ9UQB9 309 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 SETBP1Q9Y6X0 1596 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 GSG1L2A8MUP6 293 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 TDP2O95551 362 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 UBTFL6P0CB48 400 aaPredicted RBP18.33■□□□□ 0.52
SYNPO-201ENST00000307662 FOXD4Q12950 439 aaPredicted RBP18.33■□□□□ 0.52
SYNPO-201ENST00000307662 C7orf25Q9BPX7 421 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 STK33Q9BYT3 514 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 UVRAGQ9P2Y5 699 aa18.33■□□□□ 0.52
SYNPO-201ENST00000307662 DENND3A2RUS2 1198 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 SCP2P22307 547 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 POTEAQ6S8J7 498 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 THTPAQ9BU02 230 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 PDP2Q9P2J9 529 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 SATB2Q9UPW6 733 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.32■□□□□ 0.52
SYNPO-201ENST00000307662 ACADSP16219 412 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 FOXP4Q8IVH2 680 aaPredicted RBP18.32■□□□□ 0.52
SYNPO-201ENST00000307662 DCP1AQ9NPI6 582 aaPredicted RBP18.32■□□□□ 0.52
SYNPO-201ENST00000307662 STX3Q13277 289 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 MTMR1Q13613 665 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 TRIP10Q15642 601 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 SPDYE1Q8NFV5 336 aaPredicted RBP18.32■□□□□ 0.52
SYNPO-201ENST00000307662 DBNDD1Q9H9R9 158 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 GEMIN8Q9NWZ8 242 aaKnown RBP18.32■□□□□ 0.52
SYNPO-201ENST00000307662 H0Y626 953 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 TRIM16O95361 564 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 STAT3P40763 770 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 KCNQ4P56696 695 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 RCOR2Q8IZ40 523 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 AGR3Q8TD06 166 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 MROH7-TTC4A0A0A0MT08 1334 aa18.32■□□□□ 0.52
SYNPO-201ENST00000307662 C9orf72Q96LT7 481 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 NLRP4Q96MN2 994 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 ISCA1Q9BUE6 129 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 PHF20Q9BVI0 1012 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 ASPSCR1Q9BZE9 553 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 FOXP3Q9BZS1 431 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 SRP68Q9UHB9 627 aaKnown RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 BCS1LQ9Y276 419 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 CROCC2H7BZ55 1655 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 M0QYV0 167 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 PDIA5Q14554 519 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 SLC27A3Q5K4L6 730 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 EML4Q9HC35 981 aaKnown RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 B2RBV5 119 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 KLHL2O95198 593 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 HSD17B3P37058 310 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 BRINP3Q76B58 766 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 MYCBPAPQ8TBZ2 947 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 EME1Q96AY2 570 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 ERP44Q9BS26 406 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 MAGEB5Q9BZ81 275 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 VCPKMTQ9H867 229 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 TBC1D22BQ9NU19 505 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 NEU2Q9Y3R4 380 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 ADGRB3O60242 1522 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 PDS5AQ29RF7 1337 aaKnown RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 CYP26A1O43174 497 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 ESRRBO95718 433 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 FASTKD1Q53R41 847 aaKnown RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 C16orf89Q6UX73 402 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 RIBC1Q8N443 379 aaPredicted RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 MARCH10Q8NA82 808 aaPredicted RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 TULP4Q9NRJ4 1543 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 ARHGEF37A1IGU5 675 aa18.31■□□□□ 0.52
SYNPO-201ENST00000307662 GTPBP10A4D1E9 387 aaKnown RBP18.31■□□□□ 0.52
SYNPO-201ENST00000307662 TMEM247A6NEH6 219 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms