RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CNKSR2Q8WXI2 1034 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 TAOK3Q9H2K8 898 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 PFASO15067 1338 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 SHOX2O60902 331 aaPredicted RBP17.85■□□□□ 0.45
VPS54-201ENST00000272322 KIAA0754O94854 1291 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 KIF22Q14807 665 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 QPCTQ16769 361 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 ANGEL2Q5VTE6 544 aaKnown RBP17.85■□□□□ 0.45
VPS54-201ENST00000272322 ZNF772Q68DY9 489 aaPredicted RBP17.85■□□□□ 0.45
VPS54-201ENST00000272322 EPS8L3Q8TE67 593 aaKnown RBP17.85■□□□□ 0.45
VPS54-201ENST00000272322 ATP8B4Q8TF62 1192 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 HAUS1Q96CS2 278 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 SYT11Q9BT88 431 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 NENFQ9UMX5 172 aa17.85■□□□□ 0.45
VPS54-201ENST00000272322 CSDE1O75534 798 aaKnown RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 RARAP10276 462 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 PRKCEQ02156 737 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 NLRP14Q86W24 1093 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 POLR3FQ9H1D9 316 aaPredicted RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 AZI2Q9H6S1 392 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 PICK1Q9NRD5 415 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 BTNL10A8MVZ5 291 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 POLGP54098 1239 aaPredicted RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 CORO7P57737 925 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 NLRP11P59045 1033 aaKnown RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 GTF2BQ00403 316 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 TMEM270Q6UE05 265 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 ZNF473Q8WTR7 871 aaKnown RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 CYFIP2Q96F07 1278 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 ZSWIM1Q9BR11 485 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 TARS2Q9BW92 718 aaKnown RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 LRRC37AA6NMS7 1700 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 ERLIN2O94905 339 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 MAPK4P31152 587 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 PTGISQ16647 500 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 ATP13A4Q4VNC1 1196 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 CALR3Q96L12 384 aaKnown RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 TEPSINQ96N21 525 aa17.84■□□□□ 0.45
VPS54-201ENST00000272322 MOV10L1Q9BXT6 1211 aaKnown RBP17.84■□□□□ 0.45
VPS54-201ENST00000272322 A0A0A6YYK5 440 aaPredicted RBP17.83■□□□□ 0.45
VPS54-201ENST00000272322 H0YGN5 161 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 SLC26A4O43511 780 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 RTN2O75298 545 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 RGS20O76081 388 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 TNFRSF8P28908 595 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 PTENP60484 403 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 DPH6Q7L8W6 267 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 RHOT2Q8IXI1 618 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 RASGEF1CQ8N431 466 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 PAGR1Q9BTK6 254 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 DDX23Q9BUQ8 820 aaKnown RBP17.83■□□□□ 0.45
VPS54-201ENST00000272322 STRA6Q9BX79 667 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 CARD9Q9H257 536 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 CHST7Q9NS84 486 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 NFS1Q9Y697 457 aa17.83■□□□□ 0.45
VPS54-201ENST00000272322 BRCA2P51587 3418 aa17.83■□□□□ 0.44
VPS54-201ENST00000272322 SP2Q02086 613 aa17.83■□□□□ 0.44
VPS54-201ENST00000272322 TTC31Q49AM3 519 aaPredicted RBP17.83■□□□□ 0.44
VPS54-201ENST00000272322 CPLX4Q7Z7G2 160 aa17.83■□□□□ 0.44
VPS54-201ENST00000272322 FAM83AQ86UY5 434 aa17.83■□□□□ 0.44
VPS54-201ENST00000272322 MYCBPAPQ8TBZ2 947 aa17.83■□□□□ 0.44
VPS54-201ENST00000272322 RNF25Q96BH1 459 aaPredicted RBP17.83■□□□□ 0.44
VPS54-201ENST00000272322 SLITRK6Q9H5Y7 841 aa17.83■□□□□ 0.44
VPS54-201ENST00000272322 KCND2Q9NZV8 630 aa17.83■□□□□ 0.44
VPS54-201ENST00000272322 RPS6KA5O75582 802 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 SCP2P22307 547 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 LONRF1Q17RB8 773 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 DENND2CQ68D51 928 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 SCARA5Q6ZMJ2 495 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 HERPUD2Q9BSE4 406 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 RAB17Q9H0T7 212 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 PIM2Q9P1W9 311 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 NOCTQ9UK39 431 aaKnown RBP17.82■□□□□ 0.44
VPS54-201ENST00000272322 UMODL1Q5DID0 1318 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 PIAS1O75925 651 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 PMS2P54278 862 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 DRP2Q13474 957 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 KDM7AQ6ZMT4 941 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 HELQQ8TDG4 1101 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 ZNF516Q92618 1163 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 R3HDMLQ9H3Y0 253 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 TTLL13PA6NNM8 815 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 HMGB1P1B2RPK0 211 aaPredicted RBP17.82■□□□□ 0.44
VPS54-201ENST00000272322 SRGAP2CP0DJJ0 459 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 ACTR2P61160 394 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 ORC1Q13415 861 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 TMEM132BQ14DG7 1078 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 SGO2Q562F6 1265 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 POTEAQ6S8J7 498 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 FAM71AQ8IYT1 594 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 ANKRD35Q8N283 1001 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 JPH1Q9HDC5 661 aaPredicted RBP17.82■□□□□ 0.44
VPS54-201ENST00000272322 XPNPEP1Q9NQW7 623 aa17.82■□□□□ 0.44
VPS54-201ENST00000272322 KIAA0391O15091 583 aaKnown RBP17.81■□□□□ 0.44
VPS54-201ENST00000272322 CTNND1O60716 968 aaKnown RBP17.81■□□□□ 0.44
VPS54-201ENST00000272322 TRIM50Q86XT4 487 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 C4orf19Q8IY42 314 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 EPN3Q9H201 632 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 FAM114A2Q9NRY5 505 aa17.81■□□□□ 0.44
VPS54-201ENST00000272322 INTUQ9ULD6 942 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms