RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TRIB2Q92519 343 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 MRPL4Q9BYD3 311 aaKnown RBP17.86■□□□□ 0.45
USP4-201ENST00000265560 CDHR5Q9HBB8 845 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 PHLPP2Q6ZVD8 1323 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 C6orf222P0C671 652 aaPredicted RBP17.85■□□□□ 0.45
USP4-201ENST00000265560 SNRPFP62306 86 aaKnown RBP17.85■□□□□ 0.45
USP4-201ENST00000265560 PRPF4BQ13523 1007 aaKnown RBP17.85■□□□□ 0.45
USP4-201ENST00000265560 ZNF484Q5JVG2 852 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 GLYCTKQ8IVS8 523 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 TMEM134Q9H6X4 195 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 HOXC6P09630 235 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 DNA2P51530 1060 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 VAV2P52735 878 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 MBTD1Q05BQ5 628 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 TAF3Q5VWG9 929 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 SLC20A1Q8WUM9 679 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 CAPNS2Q96L46 248 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 KREMEN1Q96MU8 473 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 APBA2Q99767 749 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 STK33Q9BYT3 514 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 SOX5P35711 763 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 STAT1P42224 750 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 EFNA5P52803 228 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 PTENP60484 403 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 RBM10P98175 930 aaKnown RBP17.85■□□□□ 0.45
USP4-201ENST00000265560 ZNF568Q3ZCX4 644 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 KIAA0319LQ8IZA0 1049 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 PSMB7Q99436 277 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 RAB20Q9NX57 234 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 CAPN6Q9Y6Q1 641 aa17.85■□□□□ 0.45
USP4-201ENST00000265560 A6NJR5 290 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 TOM1L1O75674 476 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 LACTBP83111 547 aaPredicted RBP17.84■□□□□ 0.45
USP4-201ENST00000265560 ATF7IP2Q5U623 682 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 TDRD10Q5VZ19 366 aaKnown RBP17.84■□□□□ 0.45
USP4-201ENST00000265560 CDCA2Q69YH5 1023 aaPredicted RBP17.84■□□□□ 0.45
USP4-201ENST00000265560 FBXL13Q8NEE6 735 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 NUCKS1Q9H1E3 243 aaKnown RBP17.84■□□□□ 0.45
USP4-201ENST00000265560 TMEM8AQ9HCN3 771 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 STYXL1Q9Y6J8 313 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 KRT86O43790 486 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 SRGAP2O75044 1071 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 TOMM70O94826 608 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 SMIM10L2AP0DMW4 78 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 SMIM10L2BP0DMW5 78 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 U2AF1L4Q8WU68 220 aaKnown RBP17.84■□□□□ 0.45
USP4-201ENST00000265560 SYN2Q92777 582 aaPredicted RBP17.84■□□□□ 0.45
USP4-201ENST00000265560 CARD6Q9BX69 1037 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 GOLPH3Q9H4A6 298 aa17.84■□□□□ 0.45
USP4-201ENST00000265560 CHORDC1Q9UHD1 332 aaPredicted RBP17.84■□□□□ 0.45
USP4-201ENST00000265560 CYP26A1O43174 497 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 SSTR3P32745 418 aaPredicted RBP17.83■□□□□ 0.45
USP4-201ENST00000265560 TFDP1Q14186 410 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 SLC18A3Q16572 532 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 DEFB115Q30KQ5 88 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 SLFN12LQ6IEE8 588 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 NFRKBQ6P4R8 1299 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 RUFY4Q6ZNE9 571 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 KCNG1Q9UIX4 513 aa17.83■□□□□ 0.45
USP4-201ENST00000265560 MAPK8IP2Q13387 824 aaPredicted RBP17.83■□□□□ 0.44
USP4-201ENST00000265560 AP5M1Q9H0R1 490 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 ZCCHC17Q9NP64 241 aaKnown RBP17.83■□□□□ 0.44
USP4-201ENST00000265560 SSU72P8A0A1W2PR75 194 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 GPR25O00155 361 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 TREHO43280 583 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 TMOD1P28289 359 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 TMEM174Q8WUU8 243 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 JPH2Q9BR39 696 aaPredicted RBP17.83■□□□□ 0.44
USP4-201ENST00000265560 FZD8Q9H461 694 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 TAS2R14Q9NYV8 317 aa17.83■□□□□ 0.44
USP4-201ENST00000265560 DDX3XO00571 662 aaKnown RBP eCLIP17.82■□□□□ 0.442e-8■■■■□ 21
USP4-201ENST00000265560 ACKR2O00590 384 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 GNASQ5JWF2 1037 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 TMC2Q8TDI7 906 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 DNAJB3Q8WWF6 145 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 MTMR12Q9C0I1 747 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 EPC1Q9H2F5 836 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 RNF186Q9NXI6 227 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 MAPK13O15264 365 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 SGPL1O95470 568 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 VNN1O95497 513 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 CST3P01034 146 aaPredicted RBP17.82■□□□□ 0.44
USP4-201ENST00000265560 PIGRP01833 764 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 HLA-DRAP01903 254 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 ATP1A1P05023 1023 aaKnown RBP17.82■□□□□ 0.44
USP4-201ENST00000265560 CXCL8P10145 99 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 FCGRTP55899 365 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 TFAMQ00059 246 aaKnown RBP17.82■□□□□ 0.44
USP4-201ENST00000265560 MFSD10Q14728 455 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 ALKBH5Q6P6C2 394 aaKnown RBP17.82■□□□□ 0.44
USP4-201ENST00000265560 CXCL17Q6UXB2 119 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 SLC47A2Q86VL8 602 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 LNX1Q8TBB1 728 aaPredicted RBP17.82■□□□□ 0.44
USP4-201ENST00000265560 OSMRQ99650 979 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 PUF60Q9UHX1 559 aaKnown RBP17.82■□□□□ 0.44
USP4-201ENST00000265560 MGAMO43451 1857 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 UMODL1Q5DID0 1318 aa17.82■□□□□ 0.44
USP4-201ENST00000265560 ABLIM1O14639 778 aa17.81■□□□□ 0.44
USP4-201ENST00000265560 GAS2O43903 313 aaKnown RBP17.81■□□□□ 0.44
USP4-201ENST00000265560 FAM189A1O60320 539 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms