RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 YWHABP31946 246 aaKnown RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 HIF1AQ16665 826 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 KIAA1841Q6NSI8 718 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 C16orf86Q6ZW13 317 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 CDKL3Q8IVW4 592 aaPredicted RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 REXO1L1PQ8IX06 675 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 MMGT1Q8N4V1 131 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 ANKS1AQ92625 1134 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 GCOM2Q9BZD3 368 aaPredicted RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 SUDS3Q9H7L9 328 aaPredicted RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 KLC4Q9NSK0 619 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 HSPBP1Q9NZL4 362 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 PLAGL2Q9UPG8 496 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 FHOD1Q9Y613 1164 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 A0A0G2JLW4 131 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 ZBTB24O43167 697 aaPredicted RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 CAMTA2O94983 1202 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 EEF1B2P24534 225 aaKnown RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 RXRBP28702 533 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 NOP14P78316 857 aaKnown RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 RHPN2Q8IUC4 686 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 TBC1D16Q8TBP0 767 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 RIN2Q8WYP3 895 aaPredicted RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 CCDC124Q96CT7 223 aaKnown RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 PIM2Q9P1W9 311 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 TRIM33Q9UPN9 1127 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 ARL2BPQ9Y2Y0 163 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 PI4K2BG5E9Z4 385 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 SLC9A1P19634 815 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 CIITAP33076 1130 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 PPARGP37231 505 aaPredicted RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 FXR2P51116 673 aaKnown RBP eCLIP11.4□□□□□ -0.58
CD44-201ENST00000263398 CDH6P55285 790 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 SPATA21Q7Z572 469 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 FBXO33Q7Z6M2 555 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 SYN2Q92777 582 aaPredicted RBP11.4□□□□□ -0.58
CD44-201ENST00000263398 SLC10A4Q96EP9 437 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 NRBF2Q96F24 287 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 TSC22D3Q99576 134 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 ECT2Q9H8V3 914 aa11.4□□□□□ -0.58
CD44-201ENST00000263398 CCDC22O60826 627 aa11.4□□□□□ -0.59
CD44-201ENST00000263398 CRAMP1Q96RY5 1269 aa11.4□□□□□ -0.59
CD44-201ENST00000263398 SMG5Q9UPR3 1016 aaKnown RBP11.4□□□□□ -0.59
CD44-201ENST00000263398 DIP2AQ14689 1571 aa11.4□□□□□ -0.59
CD44-201ENST00000263398 CEP170BQ9Y4F5 1589 aaPredicted RBP11.4□□□□□ -0.59
CD44-201ENST00000263398 MAP2P11137 1827 aaKnown RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 NVLO15381 856 aaKnown RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 ZFXP17010 805 aaPredicted RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 RPA1P27694 616 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.39□□□□□ -0.59
CD44-201ENST00000263398 ZNF473Q8WTR7 871 aaKnown RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 TRIM51Q9BSJ1 452 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 MRPL46Q9H2W6 279 aaKnown RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 UBN1Q9NPG3 1134 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 MRPL40Q9NQ50 206 aaKnown RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 LRFN2Q9ULH4 789 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 CFAP69A5D8W1 941 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 TMEM253P0C7T8 217 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 KLRC1P26715 233 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 TTLL4Q14679 1199 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 AGBL2Q5U5Z8 902 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 CYFIP1Q7L576 1253 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 GIPC2Q8TF65 315 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 FOXP3Q9BZS1 431 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 TRIM15Q9C019 465 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 TRABDQ9H4I3 376 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 FAM217BQ9NTX9 383 aaPredicted RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 TCP11X1B4DZS4 312 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 ARPP19P56211 112 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 CNPY4Q8N129 248 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 ZC3H15Q8WU90 426 aaKnown RBP11.39□□□□□ -0.59
CD44-201ENST00000263398 FAM161BQ96MY7 647 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 FSD1LQ9BXM9 530 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 SMYD3Q9H7B4 428 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 HPSEQ9Y251 543 aa11.39□□□□□ -0.59
CD44-201ENST00000263398 RAD51CO43502 376 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 DIAPH2O60879 1101 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 TYK2P29597 1187 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 CARSP49589 748 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 MORF4L2Q15014 288 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 XKR3Q5GH77 459 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 RCOR2Q8IZ40 523 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 C18orf8Q96DM3 657 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 SGSM3Q96HU1 749 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 FUCA2Q9BTY2 467 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 MAGEB5Q9BZ81 275 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 SLC13A1Q9BZW2 595 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 DHX35Q9H5Z1 703 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 XAB2Q9HCS7 855 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 JPH1Q9HDC5 661 aaPredicted RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 WDR35Q9P2L0 1181 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 KITP10721 976 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 PYGBP11216 843 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 IRAK1P51617 712 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 KIF19Q2TAC6 998 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 TWF2Q6IBS0 349 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 USP38Q8NB14 1042 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 CXorf38Q8TB03 319 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 RBM15Q96T37 977 aaKnown RBP eCLIP11.38□□□□□ -0.59
CD44-201ENST00000263398 WWP1Q9H0M0 922 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms